YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40743055, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLHNPNNWH WVNKDVSAWA KTYLKEKLRA VSAEEDGVTA KVSDVLTMDG DVDVSQRKGK  60
   61 VITLFDVKLQ LEYEGKTKDE EAVSGTITIP EVAHDTEEDE YVFDIDIYSD SPSKQPVKDL 120
  121 VRSKIVPQIR KELVQLAPAL VAEHGKDIQH APGENPSKGF TPAVSYPQTK KQEAPASKPA 180
  181 TTTTTNKVSV NTTTVTASDE FRTTAEELFK TFTEPERLAA FTRGQPRQWD GAKVGGKYSI 240
  241 FDGNVTGEFV KLESPTLLVQ KWRLAQWPEG HFSTLEINFD QNDVDGVTQM RVSWAGVPVG 300
  301 QEDVTKQNWE LYYVRSIKQT FGSRSFVFTW RQLLITILTL FLGHMINLTI FSYSCHDNV

Type	Start	End	Confidence
Non-Cytoplasmic	1	327	0.51
Transmembrane Helix	328	353	0.74
Cytoplasmic	354	359	0.38