YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40742991, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFSSRFLRI PRPQTFLYVM SLQTGASLIT LSLLLNKISG LYGLLALLTG YHLSPVQLSM  60
   61 YLYSLIALAS TVLLFPHIRK QSPLQCLALA WLYVFDSAIN AAYTAAFGVT WFLVIAQHTD 120
  121 DDNRKASGPG SDTIGQTAGF TGSEYDTVRT AASASYSAKR TDQFGNAVTQ PESFQSIFFI 180
  181 CVLWTIRLYF VFVMLAFARQ ALRLYVAMPR HTQLPTHSRN TSIASMASVA DIDREPFSPY 240
  241 SPEGQGWQGK LGRAMISVGR NYWLGEEEDG NGDWVNMSHR FRPSGHGSEL PGALERERRR 300
  301 RSGTGPPKPS QAAVQAASLQ QPARDPLPSP GLTVKVQDWD EAR

Type	Start	End	Confidence
Cytoplasmic	1	15	0.95
Transmembrane Helix	16	35	0.94
Non-Cytoplasmic	36	57	0.79
Transmembrane Helix	58	78	0.91
Cytoplasmic	79	88	0.84
Transmembrane Helix	89	109	0.89
Non-Cytoplasmic	110	175	0.95
Transmembrane Helix	176	198	0.88
Cytoplasmic	199	343	0.98