YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49108966, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	159	0.95
Transmembrane Helix	160	180	0.89
Non-Cytoplasmic	181	187	0.73
Transmembrane Helix	188	209	0.92
Cytoplasmic	210	220	0.83
Transmembrane Helix	221	242	0.88
Non-Cytoplasmic	243	251	0.68
Transmembrane Helix	252	274	0.90
Cytoplasmic	275	283	0.77
Transmembrane Helix	284	306	0.86
Non-Cytoplasmic	307	319	0.73
Transmembrane Helix	320	340	0.78
Cytoplasmic	341	401	0.65
Transmembrane Helix	402	424	0.81
Non-Cytoplasmic	425	438	0.45
Transmembrane Helix	439	459	0.75
Cytoplasmic	460	470	0.50
Transmembrane Helix	471	495	0.86
Non-Cytoplasmic	496	500	0.46
Transmembrane Helix	501	517	0.88
Cytoplasmic	518	522	0.54
Transmembrane Helix	523	543	0.92
Non-Cytoplasmic	544	544	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRHLAWYDQ DGEPTIHNPF KKFRRSPRRT NSIQLESRLT QFSSAGAVRP EEEIRRNREI  60
   61 REGLGGPAHS DSFPPGTGTT VDSVARPESM EKAEPEPSMS SGDPINVSTR ASPAGESEGI 120
  121 PRKRTRFLRL SEPSNEEGKE ISEDELRDKQ KFTPVGQFKA TVLNSWINIL ILAAPVGIAL 180
  181 NYVDVDPVAV FVVNFIAIIP LAAMLSFATE EIALRTGETI GGLLNASFGN AVELIVAIIA 240
  241 LVHNEVLIVQ TSLIGSMLSN LLLVLGMCFL FGGINRLEQH FNPVVAQTAA SLLSLSVGAL 300
  301 IIPTAFNAWS DADKSKTAPL SRGTSVILLV VYGCYLYFQL STHVEMYNAP SQKSEKIRQK 360
  361 VSEGDASRGI AQIGHMSAAL AGANNEPVQD PDDEPEEPQL HIYVAIATLC ISTALVGVCA 420
  421 EFMVDSIDAL TDRGGISKTF VGLILLPIVG NAAEHATAVT VAIKDKMDLS IGVAVGSSMQ 480
  481 IAMLVLPFIV VLGWIMGKDD MVILLFVSVL LVNYLIADGK SHWLEGVLLM MMYIIISVAA 540
  541 WFYG