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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|67900922, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNKSIFLRS IDDPAVARQY TEHKVQTTVA RFAPSGFYVA SGDASGVVRV WDCVGEGITK  60
   61 GEYSIVNGRI NDLAWDGDSQ RIIAVGDGKQ RYGHCITWDS GNTVGEISGH TQAINAVSIR 120
  121 QQRPLRAAAA GDDKNVVFYH GAPFKFNTGI RDKHTNYIYG VGFSPDGSTL VSVGADRKIW 180
  181 LYDGKSGEVK GQIGEGEHKG SIFAVSWSKD SRKFVTASAD KTVKIWDAEA GKVTQNWNIG 240
  241 GEGNQNFLNQ QVGVVWPPGR SDNLLISLSL SGDLNYLVEG TPEPRQIIQG HQKNITSLTA 300
  301 FESSSGEETL WTGSFDGRVC GWDVPTGKAE TIEGDGSSSY IAGLTSTQEG AGRLYSVAWD 360
  361 DTIRSLDIGA KTYTGSSSKL SGQPKGIAGG GTTVLVANAE SIEIHRDGQK VGDFKPNFSV 420
  421 TAVAAHGSIA AIGGDDSTVQ ICDIAGTSLT PKHDFKASRD VVSAMAFSPD GSKLAIGDSR 480
  481 GRVLVYKVAD GSLVNDRWTA HTSRITSIAW NDNGAHIVSG ALDTNIFVWS LTNPGDWLQV 540
  541 SNAHKEGVNG VAWIAGGSKV ASAGADAAVK LRQATFILPK TGQRLKGLVQ LRNSHHNSDG 600
  601 HRDNEERRGL LSGELPPAAE GVVRRVRGKL EEQWTLLRRF VTSEPGIGVL KCSLAYLLGS 660
  661 LATFVPILTA LLGHQDSKHM VATITVYFHP ARSQGSMFKA LVCACLAFIY TAFISITMFC 720
  721 GGGLGFIGWT KQRLNDPLVN VACSLASLST ISVLTKEGAV QAGDLSFTKI SHVLKMIIMG 780
  781 VSATMTVSFL IFPISARKKL RSNLTSATET MATMLALITE SFLSGSEEEL QTAEFVNAAA 840
  841 QHKKAYGQLD SLVKEAKLEH YVRGTEKEYR LEKNLVRWVQ DITHNLGGLR SAASMQFQLL 900
  901 KQTKPFGSPQ PQSIGLSHQG VDVCRSISPW SMAEDRPYLE PIDERPEDDI SEPDVLRPTL 960
  961 SRRQTSESEA SAALLPADIF AIFIDHLGPS MEIFKEIPFG PAPSYKVTVD SRFITSLDRA1020
 1021 LELYKASREE ALKSIYREKD IFKVKTLEIE ADLEEVAASC GHFSFSLLEF GEQLKELLAI1080
 1081 LDELQLESEE RPHGRSWNWL KFWRKNDLER RRFAESSPLR NSIAIPQPSY SSSQLQNSAP1140
 1141 EFKKPFAKTR IGYQIWRSLS VFRRDDMKFA IKVGTGAALY ACPSFITSTR PIYSHWRGEW1200
 1201 GLLSYMLVCS MTIGASNTTG YARFLGTCLG AVCAILSWYI TDGNALGLAF SGLMMATWTS1260
 1261 YIIIVKRQGP MGRFIMLTYN LSVLYAYSLT QQDGQDDQDE GGDSPVITEI ALHRVVAVFS1320
 1321 GCIWGIIITR LIWPISARKR LKDGLALLWL RLSLIWKSGP LSATHSSKQQ TEFMTARDKL1380
 1381 EVERFLAHLE SLQVSARSEF QLKQAFPDAV YTNLLAHTRN MVNAFVAMNL ELAKNMTASQ1440
 1441 GELAILDYTV SERRHLSSRI SHLLSFMASS MKMEYPLVDN LPNVEHARDR LLARLFHYRK1500
 1501 NWEISKSSTD EDYSLLYAYD FIVIRLDSNR LPSRLRAARR VPVSLTSPTM QQIDLAALNR1560
 1561 AAEDSASAVP PSRNAAPTQK SKALISVSRL DLGPPYLELK SRIGANWAEY KEAITLFLLG1620
 1621 QLNQDELSSR IDPIICADPK TEHLHNNFIC AIIANLTRDL PDHGVASWVS ANDKPSVVSK1680
 1681 PTSGDAAEQR LKTEVMQLPP RDRRRIKAIP ERDPHDAVRN ELEEYHLAKQ IKLPSQVPAS1740
 1741 AGGLNMTNWE LEVRKRYVQP LASETGEFPD AESIHARMTP ICYEESVVNG AGVACAEFMA1800
 1801 IATETFVKEV LSVVFSRTRC NGPSGTINGM MKRSYKQQLE REELAFTRGE IAKDGATGLL1860
 1861 PVEAKEARTR SALGVRDLRL SLELGSGVLS HMPLLVDQIM GGYFEDELEA DRRGRTDTNG1920
 1921 TEPTDMDEMD VDEADWGWEG ATAGDHQQLG TLLDECLAMA S

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