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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|40742445, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPLSAEDG EIFERLQQTA DPKVLEEQQQ AVNERLHAIY QKAQDRLGEL IDQNSTLPCV  60
   61 ISSVQVLNAK NTRRGFLEQI LNPLLSQHRK QTYTLSEALR EISVRADKLN RFDIFQQPVS 120
  121 VYLDQTPASE TQTGLTNISV YYSVKEKSRV LLKTGTDLGN AEGSAYGNLL WRNVFGGAEN 180
  181 LNFNASLGTR TRSAYQAAFD TPIFSDPDFR LELGGIASST QKTWASHEEV LKGGWSKLRW 240
  241 LSRSGQRHEI GYSGFWRQVT GLADNASPTV RANAGDSVKS SVFHSWTTDR RDNPFLPSRG 300
  301 YYAKAFNELA GWGPLKGDVA FWKSEIETQS AIPIPIPGVK GDSGVSFTTG FRAGLLYPLS 360
  361 LDSDSRPRLS RLNDRFQLGG PTDVRGFRLS GLGPRDGTDA VGGDVYAAGS ANLLFPVPRV 420
  421 GAEKPLRLQA FVNGGRLLPL RNAQKAAPSS SSEVKDAMKF TLSEIGNGLP SIAAGVGLVY 480
  481 AHPAARFELN ISLPLVLRKG EEGRKGLQLG IEASQAPLAA LAPLQPYGAQ SSAQNLQFYP 540
  541 SSYSSVSGHT TPSQASYGGF GAPPNTTAQG YPVGGAGYGG FGSPSGGVSG RMGEQGGLRT 600
  601 GWLAAFGTEG YDGEPPLLEE LGVNFEHIRT KTLTVLNPFA RIDQHLMDDS DLYGALLYIV 660
  661 LYGTFLLLSG KVFYGYIYGV AVFGTVALHL ILSLMSPVDP TSPTQPPNAA DPSGNYDPHA 720
  721 KPGSSGHFSA TLTFPRSASV LGYCFLPLVL TSLLGILVPM DTMFGYLLTT AAVGWCTYSA 780
  781 SGMFCAVARM SGMRGLVAYP LALFYVVFGI MGLFSSTGSG TLAAKPEAA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle