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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|67541645, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKQGDTQF SASSNSSSRR ASAVSGEDTR MSSGTVRQSR MTAQTRTYGT LDSSERTTVD  60
   61 SQFVEGQPES SSRAPLPASP SMGPLRSDGD KLRKPPITRR MSSKRHVPHK GQEFSTDDDV 120
  121 HEIEEDIALQ ASNPQPSPRI RPLRKQSSTL RRRLNARVNP FSSSGNADYD DEDASYDDAG 180
  181 LPESSLGMNG KDSFPQDLDD DNDSEGSNNQ EADNDDDASD AESFTLKDRQ QAINETHPFG 240
  241 IRLWKPALYK KSRSVEKTAE GDIHSSPGGR VGTLLFLMNL LWTLFFGWWL AIAALMGASA 300
  301 CFIFSYSASA VEYGKAFSGL SWYLFYPFGS FVRLDTDEHY AEEDEGEGRS ISEYEQWQNG 360
  361 DIEHGGLFFG PRRNRSLVGR RRNSVDSAGE QDSLLGRAPR GRSEDSSLRP KRRLFGRGEW 420
  421 TLGRVVFFVF FYFLVGPLML FVSLVCWLFV FWIPMGRVTL ILFDHLRRHP LALSYHSDTT 480
  481 FTRISPGSSA SVLLCTYRAA GLRYWKYTVG GTNVFLINLL AVVIFVVFDY FFLREALGLQ 540
  541 IWVTHPGLIF TLALLSVIPL AYFIGQAVAS ISAQSSMGMG AAVNAFFSTV VEVYLYCVAL 600
  601 TEGKGRLVEG SIIGSIFAGI LFLPGLSMCF GAIKRKTQRF NVKSAGVTST MLLFAVIAAF 660
  661 GPTLFYQVYG SHELNCHACE SDMEPGSSDC RRCYFSQVPA INDGFFQKAV QPYSWIAAIF 720
  721 LFLSYVIGLW FTLRTHAALI WATEMDEKKT TTLPQEQSTD DPSHEFFSAA HLAAPSGNTG 780
  781 TRSSVRDSQL YKRILGQSLR DVGLTENVGE YDANQPESGP SRCNNTTPYL VPQKEEDNHS 840
  841 AFGEYAGLSK QQNETIVRKV TEVAATAATV AARDVARTRK LSGPRGTGRP AAKTASSKQV 900
  901 KTIPEDHDDV GLEQSHTTGG HDAPNWSRTK SSVILLVATI FYAVIAEILV NTVDVVLESV 960
  961 DVDEKFLGIT LFALVPNTTE FLNAISFAMN GNIALSMEIG SAYALQVCLL QIPALVLFSA1020
 1021 FYARVLDPEH LITHSFSLIF AQWDMITVIL CVFLLSYVYG EGKSNYFKGS ILVLTYLVVV1080
 1081 IGFFLSGYSN MDTMGVDRFN TLALNIESRP EKFYTIGRSK SGVAYQRVH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle