YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40742244, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKRTAESPM DFEWQSRAPG DVTSPFYQLS MQHDNQKKRS HNVFESPEKK QMPALREPNS  60
   61 QPFLFSQTKP TAPETPKSVF AQPAFMTPRK FDLDFSSGAE NMSSPENADN DDTPEQPTKT 120
  121 GHRNSLFGMY GRFAPSPGRG EIPRLSHYSN AVARRVQKRR LRNKALDLQV HRDSDDESDR 180
  181 PSSSEGQQKV KHKGGHKDEA PSSPTSTFKK FFTLVEAHPN VPNILSWWAQ LALNFFIFSM 240
  241 AGYVLWGIVW TIRAEFDQAA EAASDTILAE MAACAKDYVD NRCGGGDRLP ALETVCANWE 300
  301 RCMNRDPAKV GRAKVSAQTM AIIINSFIDP ISWKAILFFL ATISTVTFVS NWSFRSFRNR 360
  361 YNHDFAPPPP DYQRQSSGQH HPLPPQLPDQ HTQFGYGTHH QDDPTGFVKQ DVPLLLENHP 420
  421 QAMNITDRSR ERSRNPRTPS PVKRGRKLL

Type	Start	End	Confidence
Cytoplasmic	1	226	0.55
Transmembrane Helix	227	250	0.84
Non-Cytoplasmic	251	330	0.56
Transmembrane Helix	331	354	0.82
Cytoplasmic	355	449	0.71