YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40742046, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.95
Transmembrane Helix	33	55	0.90
Non-Cytoplasmic	56	76	0.89
Transmembrane Helix	77	101	0.84
Cytoplasmic	102	119	0.83
Transmembrane Helix	120	139	0.92
Non-Cytoplasmic	140	144	0.86
Transmembrane Helix	145	167	0.94
Cytoplasmic	168	174	0.87
Transmembrane Helix	175	195	0.91
Non-Cytoplasmic	196	243	0.71
Transmembrane Helix	244	265	0.87
Cytoplasmic	266	284	0.67
Transmembrane Helix	285	306	0.85
Non-Cytoplasmic	307	358	0.73
Transmembrane Helix	359	379	0.81
Cytoplasmic	380	414	0.94
Transmembrane Helix	415	434	0.91
Non-Cytoplasmic	435	439	0.68
Transmembrane Helix	440	458	0.90
Cytoplasmic	459	478	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGLRFLDLI KPFTPLLPEV AAPETKVPFN QKLMWTGLTL LIFLVMSQMP LYGIVSSDTS  60
   61 DPLYWLRMML ASNRGTLMEL GITPIISSGM VFQLLAGTHL IDVNLDLKTD RELYQTAQKL 120
  121 FAIILSFGQA CVYVLTGLYG QPSDLGAGIC VLLIVQLVVA GLVVILLDEL LQKGYGLGSG 180
  181 ISLFIATNIC ESIVWKAFSP TTINTGRGPE FEGAIIALFH LLFTWSDKQR ALREAFYRQN 240
  241 LPNVMNLLAT LVVFAAVIYL QGFRVEIPVK SSRQRGMRGS YPVRLFYTSN MPIMLQSALC 300
  301 SNIFLISQML YSRFSDNILV KLLGVWEPRE GSAQLHASSG VAYYMSPPLN FREALLDPIH 360
  361 TAVYITFMLV ACALFSKTWI EVSGSAPRDV AKQLKDQGLV MAGHREQSMY RELKRIIPTA 420
  421 AAFGGACIGA LSVASDLLGA LGSGTGILLA VTIIYGYFEI AAREGDIGGG LKGLVPGN