YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40741879, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQTLPTWKD RTQNQFGKLQ IQVPWRSIQL LVPHRMRRKL RSKLRSRASP TSSIASLQTS  60
   61 LSPADTLRSL QSHRWTVYDF QYLLLLIVGI FSLTVIESPG PLGKTAIFSM LLFSLLIPMT 120
  121 RQFFLPFLPI AGWLLPRAAV THICRFIPSD WRPAIWVRVL PALENILYGA NISNILSAHQ 180
  181 NVVLDVLAWL PYGICHYGAP FVCSLIMFIF GPPGTVPLFA RTFGYISMTA VTIQLFFPCS 240
  241 PPWYENRYGL APADYSIQGD PAGLARIDKL FGIDLYTSGF HQSPVVFGAF PSLHAADSTL 300
  301 AALFMSHVFP RMKPVFVTYT LWMWWATMYL SHHYAVDLVA GGLLAAIAFY FAKTRFLPRV 360
  361 QLDKTFRWDY DYVEFGESAL EYGYGAAGYD GDFNLDSDEW TVGSSSSVSS GSLSPVDDHY 420
  421 SWETEALTSP HTDIESGRHT FSP

Type	Start	End	Confidence
Cytoplasmic	1	76	0.86
Transmembrane Helix	77	96	0.90
Non-Cytoplasmic	97	105	0.52
Transmembrane Helix	106	135	0.66
Cytoplasmic	136	154	0.61
Transmembrane Helix	155	176	0.61
Non-Cytoplasmic	177	188	0.72
Transmembrane Helix	189	211	0.85
Cytoplasmic	212	217	0.63
Transmembrane Helix	218	240	0.74
Non-Cytoplasmic	241	284	0.70
Transmembrane Helix	285	309	0.63
Cytoplasmic	310	313	0.45
Transmembrane Helix	314	328	0.41
Non-Cytoplasmic	329	329	0.43
Transmembrane Helix	330	352	0.87
Cytoplasmic	353	443	0.72