YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49095080, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.81
Transmembrane Helix	54	75	0.87
Non-Cytoplasmic	76	125	0.76
Transmembrane Helix	126	146	0.56
Cytoplasmic	147	158	0.74
Transmembrane Helix	159	181	0.77
Non-Cytoplasmic	182	188	0.65
Transmembrane Helix	189	211	0.86
Cytoplasmic	212	220	0.58
Transmembrane Helix	221	244	0.80
Non-Cytoplasmic	245	253	0.59
Transmembrane Helix	254	273	0.90
Cytoplasmic	274	279	0.66
Transmembrane Helix	280	302	0.90
Non-Cytoplasmic	303	327	0.70
Transmembrane Helix	328	343	0.62
Cytoplasmic	344	376	0.72
Transmembrane Helix	377	398	0.73
Non-Cytoplasmic	399	403	0.45
Transmembrane Helix	404	424	0.84
Cytoplasmic	425	428	0.45
Transmembrane Helix	429	446	0.53
Non-Cytoplasmic	447	475	0.61
Transmembrane Helix	476	496	0.86
Cytoplasmic	497	516	0.87
Transmembrane Helix	517	539	0.82
Non-Cytoplasmic	540	547	0.89
Transmembrane Helix	548	569	0.93
Cytoplasmic	570	591	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPSVPSSYR PRKKRKSAAL FAGSNNPLTI DAGEGKAAPA FPLVSFLWGA RAGVSQWLVL  60
   61 PLILMTVGLF RWAVSLWGYS GFNTPPMYGD FEAQRHWMEI TIHLPLSKWY TYDLQYWGLD 120
  121 YPPLTAYHSW LLGKIGSVFD PTLFALDDSR GIEGSLLKVF MRATVVVSEY LVYIPAIVTF 180
  181 LRRYTRMQAV PVWSSSIALS AILLQPATIL IDHGHFQYNT VMLGLFVASL DAIMAGRMLW 240
  241 ACIFFVGALG FKQMALYYAP VMFAFLLGIC IFPRIRLVRL FCIALVTIAS FTALLLPLLL 300
  301 GATSTEAGKQ PVPEPPLLQA FPVNLDHGSS LYLILFQLTQ IVHRIFPFSR GLFEDKVANA 360
  361 WCAIHTFYKL HHFEPELLKR VSLGATLASI LIPCAIVFRH PRASILLPAF ATVGWGFFLF 420
  421 SFQVHEKSVL LPLLPMTLLI AGDGGLNKDT RSWVGWANIL GSWTLYPLLK RDGLQVPYFV 480
  481 VTCLWAYLLG LPPTSWQIYR HQRPVGEVEA DTEPHGLTRL IHILFYLAMV GWHVLEAFIP 540
  541 PPPGKPDLWV VLNVLIGAGG FGISYLWCLW KLISLSRRID SKVEDARKKN Q