YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49094464, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.24
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLPLPDVES LADCVSFNHA VRPFLSQVAA LPERLQPAIA AKDVNALKDI YLSTNPLATA  60
   61 LAFTIFLSVL FIVFSEINRN YSQVDRFWSI LPSVFNVHFA VWARLSGLRT LNLDTIAAIS 120
  121 VIWSVRLTFN YWRRGGYSIG SEDYRWSIIR SRVNNRFAFF LFNITFISVI QPLLLLLLTT 180
  181 PTYNFLLLAR LPGGEAFELP DLIFSRVALV FIILEFFADQ QQWRFQNAKH EYNTSARIPG 240
  241 NLKDQYDPED LERGFVVSGL WSLSRHPNFA AEQAIWLTLY LWNAYRTEHY VQWTALGVIG 300
  301 LMAIFQGSVR LTEEISARKY PEYQEYQARV GRFIPRLSIT PRYKGNKNKK RVAHGKKEE

Type	Start	End	Confidence
Cytoplasmic	1	53	0.53
Transmembrane Helix	54	75	0.87
Non-Cytoplasmic	76	89	0.42
Transmembrane Helix	90	124	0.63
Cytoplasmic	125	156	0.76
Transmembrane Helix	157	178	0.91
Non-Cytoplasmic	179	201	0.79
Transmembrane Helix	202	218	0.69
Cytoplasmic	219	267	0.62
Transmembrane Helix	268	282	0.24
Non-Cytoplasmic	283	289	0.50
Transmembrane Helix	290	309	0.74
Cytoplasmic	310	359	0.68