YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40741566, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASWIQRQNN SHQVQLAATA VLSGAAVAGA ILGFQKYRRR EAVKRLKASI PTIDEKHRAE  60
   61 SLNEFGAAVP GPYWSKEDER GAALARRAQE GDYDEELILE QLARNRVFLK DEGLAKLRDA 120
  121 FIIVVGCGGV GSHAVASLAR SGVSKIRLID FDQVTLSSLN RHALATLADV GTPKVHCIRR 180
  181 RLQQIVPWVK FDCRNELFGA SAADDLLAPW TLDDADKGQK PVYVLDCIDN IQSKVELLHY 240
  241 CHSHSIPVIS SMGAGCKSDP TRVMITDMSV SSDDRLSRST RRRLKLLGVT TGIPVVFSTE 300
  301 KPGPGKATLL PLAEEEFAKG EVGELSVLPD FRSRILPVLG TMPAVFGYTL ANHVICEISE 360
  361 YPTDYSMGGK GKDKLYDTVH AQLLVTLERL ARAESESGTQ PIGLRLPMSR DDVIYLVDEI 420
  421 WRGKSVVTGL PSRLALTLWN RPSNGFKPDP QWEKEGQILI PFKPEDLVLM TKEEATRHEK 480
  481 EVLMGGKKVE DLYSEEIIQK VNQRQKEMAY YEQFR

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.51
Transmembrane Helix	14	35	0.54
Cytoplasmic	36	119	0.51
Transmembrane Helix	120	136	0.48
Non-Cytoplasmic	137	515	0.96