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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49129385, gi|...
Protein type: Transmembrane
Type Confidence: 0.77
Topology Confidence: 0.42
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLGRLSAAT LSFFPALLSI LPFFLSHFLK HARQYWPTSS LNVLETRYSE ARKQVFVAVP  60
   61 TTLVFLELVG ALVLVLTSPE HGVATVWLVA TLGARSISRR LNRRTIQNVD VPKACNVIID 120
  121 PAAPMALRLQ SNLLYGISRV YSQQCGYTLL DVQAMHDKMR QTLRSVPAGG LDPSAGKARP 180
  181 EQLVLPYDPS FLPENNLPGL GLDLSKLNRL LETESSQQSN VSIPRTPDLS QSALSNSSVL 240
  241 GLNIPSDENI LRDMGGFSSE ADVASSAKGG LDFGRVLTSS LHDEGGVLLQ PDFEFDENGN 300
  301 IVELGGRTQN EVRTRPPLLA DEDIEMAITN EPARPVRPAV FCDGDEAPRE PVEIETHGAT 360
  361 APQRQRGPKF LASDLQTALR NAELAAMNED YMHNVALAAR QKRQNRVSTQ AKRNAAYWVF 420
  421 RLGIGSVGAG VGSSRVIHPL HFFSGDELYE TLVSHKRPLE DEPEAEGRRV RAREDDEQGR 480
  481 MDIVDDTNLW NEDVELGRHQ SPPLYDDNSS QMPWNITASV QSSRHGASVA NIFGGLGSVS 540
  541 DLSSRGLPES VASFGRAPSV GPSGIGRSRN RLTSASPLAG RGFPYDLDNL SIPGHYDDDL 600
  601 DKLEGFDLGN YLDENVMGDD NSNADVAGPS HRSQELQNSL TESVMDQEGL NFLGFMAAKI 660
  661 QSLKPAEGAS ATEITFSTLL PYQDTSATVA TQGLMHILAL ATKGFLKVRQ DEYQDQSNAD 720
  721 DGVRYEFGEI FFGILQDLDP SSNNIMLYLI AKSSRCRSRL VKVSVGGGKT RYFVSNSFII 780
  781 DFFAPLLVDM GRTVDQEVHA AFVEFRAKED DKCLSVQCIY CQQIRAKNTS RQKQHLLECP 840
  841 GLRGAQAQPQ TQPQATANGI TAPNGYPPNP NPAGATAPGA APGHGALSTP GAGMIPNGVG 900
  901 SHTTPMQTPL QNLAGRPSLP ATGPVAGPST GAPQPQPPRT TPKAKPKTST SSLPAPPLDD 960
  961 VHAAFVEFRA KEEDKVRAKN TSRQRQHLLE CPTYLSVMKD SIPANNLLHT FPEGEVARSL1020
 1021 QLPVPTLELD FRLSLKVNPK VGVGPSIWGL RDWVTFVGGQ WAGRWGKGVV VVTVRDSTSL1080
 1081 RANFLLQTAD DPPAFIVVKT NGWLTGAKDV LDKLNDPQLA DGINANSYKY RVNLSMETGD1140
 1141 DRYTFLNNLM WVASGCRRGQ ENPTFCLVQP MTVQFRPTLM ESLDSPSTQG TRGRFLRRLV1200
 1201 PPAKIFRLHS VSWSLRVASF LGDDLTSFES LGYVFVMAGR HEHEHAPANA HELSRVEDAS1260
 1261 YESGLSSSDS DSIDTQPRRR QGSTASTLQT RSSSRTRPAE ISRIYSGVHL DDHSVYQGED1320
 1321 DHDSLGEESN EKDANPEVEV DNGIVTEKDR DLEANRQGAT AEIEKSRTGR SAQSSDPKLV1380
 1381 TWNGPDDPEN PKNWPMKKKW AIVVTVSCFT FISPVSSSMV APALTTLARD LGITDAIESQ1440
 1441 LTLSIFVLAY AFGPLFLGPL SEIYGRMMVL QLANLFYLVF NIACGVAKTK AQMIVFRFFA1500
 1501 GLGGSAPLAI GGGVLSDCFR PEERGKSVAI YSLAPLLGPA VGPIAGGFIA ENTTWRWVFY1560
 1561 ATTIADGVIQ IAGLILLKET YAPKILRTRA IRLRKETGDL SYQTEVERQK KTLSETIRSA1620
 1621 LIRPFRLLFT QPIVQAIAVY LAYTYGIMYL VLSTFPSLWT GEQYYNESIG IGGLNYISLG1680
 1681 IGFWLGSQIS PNIGAAIFGM GTIVTFQCAQ TYMIDSYTRF AASALAASAF LRSICGFAFP1740
 1741 LFAPYISASP WDSYYSDFGA GAYGDRHCSA GGPDLLLLSS LRTLLLAHRS ASYHRSKTTM1800
 1801 LSLLLLSIAS ISTASSITWK NCTVANFPGL ANLGVDSYID QIGNASHLDC GELQVPLDWS1860
 1861 RPHGENITLG MARYRATLPG KRLGSIIYNP GGPGGPGSIS ALAQAVGIPY YTNGTKDYYD1920
 1921 VIGLDPRGIG LSTRVKCDPD LYNKRVSLFP TTEEEFHALV EKNRALGESC RNLTGELFYH1980
 1981 VDTTSAARDL EAVRIALGDE KLNWIGLSYG TQLGGAYAEL YPESVGRMVL DGNLDHSQSE2040
 2041 TGALQTEVST YEDVLNQFFK WCNTTATDDE CPLKGQDLPQ IFDDLVAAAN ESPIEAPGCA2100
 2101 GDQSACRSTV TGQDILINAQ PYLVYERAQS KRSSANWPTL AQYLNNTIAG DATGFSSSLA2160
 2161 TSERDLSYPD IAIGCLDWRH DSTSLSDILY KLQLSSYLAP HTKGASQSYR YQVSCIGWPA2220
 2221 PLVNPPHKLN QTSMAKAPPI LMVNAFHDPE TSYVWANNLL EQIPSGVLLT RDGNGHTSYS2280
 2281 LGGEASVLID AFLVNGTLPR RNTVVGSALK MDRRLGRCGK YGHVTVYLKR KRIGVVEFEM2340
 2341 HSIPRQRALF TRSALENVSH TSHDVRNAFD SLRIKVNMVV IAEVSNWDAA GSRLLLPNLI2400
 2401 SSSAFYIDSL KYCRLLGRIP ISSEHPAALS QQWLYSSPNE SPQTRNEELK NADENQSSSD2460
 2461 KALSSTPA

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