YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67528384, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFVKYALPA LAAANAVFAA NCGSGKTITI SSQSDLDGYN TCESLDGDVE LSDRLTGTVT  60
   61 INGVQRIKGA LTSTGGANIT SLSAPSLETI DDTFKLEGAT SLTSLDFPQL TSVGEIDFQA 120
  121 VPVLQSLGFT KGVTKAGSVS IVNTGLTSLD GISLNSVGSF VVTDNTQLET VDVNNLKNAT 180
  181 NLINFAGNYD ELEISLPNLA TGTNLTIRNV SSVSLPSLTK LEGQLGFWGN SFSSLSAPNL 240
  241 TESGDLVFED NANLSNLSLP VLETVNGGFL ITRNDKLSTI NFPKLATVTG AIDFSGAFDK 300
  301 ATLPSLKNVR GGFNMQSTGN FSCSTFNSWK DNTIHGTYKC EAETSDPTTA DGTSGSSTTT 360
  361 SGDGSSPTDD AAVLTAANVP VMGVAALFGL LVQYVL

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	396	0.97