YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40741040, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDDEARVLR PRPQRVFRVN DSSGSSTPAE PSNMDTLTPK EPGSAAISRN GSIMNLTSPT  60
   61 LYGIYSPTAF EGTRDEDSAW GTEADVQPSS PDIPKVQPTL ARSRTESAAV LRTRSRLSHG 120
  121 LFRGVILPQT ISGALLFAFG VVYGIITIHL HENHWITPVK LEYTHFYGSW EYLGFWGFTG 180
  181 VAIGNVLPWL DSYLGGAIAQ EKQSSNDSAE LALSWSAVVR SVGAFVGIAF AMRRTPWEST 240
  241 TQASLTLALA NPVLWYLIDR TKTGFILSTT LAIGGMSLLL GLKPGLIPAT EGSAPVIPSL 300
  301 NGVGPEATPG ARLTQESMAV RTWIASVLFC ACVCFGNIGR QLAGESRRET MKG

Type	Start	End	Confidence
Cytoplasmic	1	123	0.98
Transmembrane Helix	124	147	0.89
Non-Cytoplasmic	148	171	0.92
Transmembrane Helix	172	193	0.89
Cytoplasmic	194	210	0.90
Transmembrane Helix	211	232	0.92
Non-Cytoplasmic	233	238	0.87
Transmembrane Helix	239	258	0.89
Cytoplasmic	259	264	0.86
Transmembrane Helix	265	287	0.88
Non-Cytoplasmic	288	318	0.94
Transmembrane Helix	319	339	0.91
Cytoplasmic	340	353	0.84