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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49094236, gi|...
Protein type: Transmembrane
Type Confidence: 0.80
Topology Confidence: 0.44
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEADKIRSK RLAKLASANP PTSAETSSEP SSAALTPQAP EASRPQSGET VAPSTPRLER  60
   61 EGSEGKRIKI TPTSAAPAEQ RPQSGTVTPV SNTPPPPKQE DTLEAFEDRT LSAVFKLTLD 120
  121 ESRQRDIHGQ RLTFLSGLRS ELEDQNLSLR ISTAVLDQAL LEAASSQPDG KPLDYLLPCW 180
  181 KRVTRLHKGF RKARNNDPKF EVICEARRLC MSYAAFALTM PEMFGLEPTG RSPLKPYLLL 240
  241 DPEDDKGVDL EFLSEAVKRF EEDETIKPAF IAAVEELSRE LSSMGINDDY KPYSFSQLPQ 300
  301 ALRNLVRHSA IASAITESSI FNHTRDPASF EKETLLGPWF RLSPLQGDAT MSFFSAPKSR 360
  361 DQGYILNAQR SIRMVQELLS SDILDIINHM VRASAEARNR ILDWFAAALN INHKRRAMQV 420
  421 DPATVSSDGF MFNLTTCLDH LCQPFMDANF TKIDRIDIEY LHRNPRVDMR DETKINADQH 480
  481 ASDAFYAKKS EGTSNFITEI FFLTAAAHHY GSESLTSKLD TLERDLKHME TTLVKLEAER 540
  541 PKWSNYPAQL RLFEIQLKRF KDKLDMGLAL KYSLQGVLFD DQWQFRSMTF MRYVVVWLLR 600
  601 VASGKNFPKE QLVLPLPEQP PEVFKCLPEY FVDDIVSNFK FIMWCMPQII TATQGDELVM 660
  661 MCIAFLECSE YIKNPYLKAG LVSILYRGTW PRPGGATGVL VDLLNSMPFA NEYLLHACMN 720
  721 FYIQAEHTGA HTQFYDKFNI RYEIFQIIKC VWPNTLYRAK LLNQAKHHLD FFVQFVNLLL 780
  781 NDVTYVLDES FGSFKTIYNT QLELRNEGAS MDPAVRQEKE ERVAQAQRSA KSYMQLTNET 840
  841 VAMLKLFTEA LADSFTMPEI VQRLADMLDY NLDAMVGPKS SNLRVENLHE YGFRPRALLS 900
  901 EIVDVYLNLM GKQNFIVAVA RDGRSYKPAN FEKAAEILRK WNLKSPEELK RWDQLQLKVK 960
  961 EAKESDDQAE EDLGEIPDEF LDPLMYTLME DPVILPASKI SIDRSTLRAH LLSDPHDPFN1020
 1021 RVPLKMEDVA PDTDLKAKIE EFKRQKIAER RAAQQGQLAL SDGAMGSFLS STLNGLPPLR1080
 1081 DFILPTPEAY VILLNIWQYF PLITVAQWLT AWHPAGKTSK DSILNIPGRI AWFAMEIVGP1140
 1141 INLLYILTTL PAKLPTLDIR TLPLTNKLVA SLYVLHYVNR AVISPFFTAP SMSPIHVFIA1200
 1201 VSAAAFNWVN STCLACWLVG YNVTTVPGYY PTSGLGAAEA ALMTPEKVLE DSLSSTVGTS1260
 1261 LVIPAVGLVL FFVGMAGNIY AERTLFALRR EAADKQASQT SANGADAKES TDGKKPNKYH1320
 1321 KVYVIPPKSG LFASILYPHY VLEWLEWTGF ALVGTTVFPA LSPPSLIPDV LSTSFRSTTG1380
 1381 GIPGFGLGLG ASRTSYGAAS APASTVHLAP WLIPAVWAAG KMRLPVLPLP AMVFVVNAVS1440
 1441 NMLPHARWGR KWISC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle