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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|40740933, gi|...
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLTTKTGQ VVDRSVLDSM LRRRLFYTPS FEIYGGVSGL YDYGPPGCAV LNNIVETWRK  60
   61 HFVLEEDMLE VDCTMLTPEE VLKTSGHVDK FADWMCKDPK TGEIFRADHL VEEVLEARLK 120
  121 GDKEARGQKV EVDAEKEAKK KKKAKSVAVK LDDAVVKEYE EILAQIDNFD GPQLEQIIAK 180
  181 YDIRNPVTGG NLLPPVAFNL MFQTSIGPSS NMPGYLRPET AQGQFLNFQK LLEFNQQAMP 240
  241 FASASIGKSF RNEISPRAGL LRVREFLMAE IEHFVDPEGG KKHARFEEVK NIELTLLNRD 300
  301 VQLSGSTKTE RMTVGKAVET GLVDNETLGY FLARIQLFLL KLGVDPTKLR FRQHMANEMA 360
  361 HYACDCWDAE LYTSYGWIEC VGCADRSAYD LNVHKNKTGA PLVVRETRAE PLKVEEWQIE 420
  421 LDKKKFGPRF KKDGKTVEAA IDALSQELRE KLALDLEKTG KIEVGYIITI EKRTRVENVR 480
  481 EYTPNVIEPS FGIGRILYSL MEHVYYYREG DEARGVLSFP PVIAPTKVLL VPLSSNPAFR 540
  541 PMVQELTTKL RRLGVSSRVD DSSASIGKRY ARNDELGTPF GVTVDFQSVK DNTITLRDRD 600
  601 STKQVRASQE EILQALKSLV EGEETWEDVR KRLPEFTGQE LYQFVLLNAF KRHELSEVVD 660
  661 VELSRDEDSV TSLAAAQSND TSIVTFVGIN SSLALQKENK NRHLRSFKID YPPRRTNSAS 720
  721 AEFKSPNGST PGQTVKLSEE SVFRTVAGSK GSTETYQRIT RLSPWKGEGA TRVAAIATGL 780
  781 ASSGEIVFFN ANTTKPSEGD VIGRIRLKSD EEAEDIDIAG QDEEKGLFPV AYTNGVDVFT 840
  841 CRISPETRSN AAPDVRCVYS PPANTNGKGP RPKFRALRFL SPTTLLLLQN APNRKGCELI 900
  901 ILDLRPTTSS SQATIIRRYK LRKSINIGLS LDVCNLGTSS SIKQQSIIAV SGSDQSLEIL 960
  961 TIDVDSSRQY RAAAGYSQIR RYATIRDVHP FSMTRICFSH FVPPPAPVTP ETPPQYIKLA1020
 1021 SVSLGNTVVV HTFPLSPTPP SSRNPRYVLV RPGESELLTG FSSTLAAVLS IVLVIFLLQA1080
 1081 FTEIRGVMPP YLGITDYLPT DIRTKIAVPY NAPLPHFPSS PTPILQTQAF PSTSAAPDEA1140
 1141 QSRTLRDIIQ DSEASILISC DPLNSKIIVE PHNPHPSSTT PEPDLDAEVT PESDLTTRPA1200
 1201 QQWTDLSVED RQTWKTYLIN AGFLDQQQDE DESILSRVFF RDSCPRRQPS SNDDHDYTSV1260
 1261 DSADKSSELL HIFLVCLSIS LPLFYDMYVY DFQMVSTGKF QHTSMPMKG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle