YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49095024, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	90	0.99
Transmembrane Helix	91	112	0.88
Non-Cytoplasmic	113	119	0.69
Transmembrane Helix	120	141	0.82
Cytoplasmic	142	157	0.87
Transmembrane Helix	158	178	0.92
Non-Cytoplasmic	179	196	0.93
Transmembrane Helix	197	219	0.90
Cytoplasmic	220	229	0.80
Transmembrane Helix	230	252	0.85
Non-Cytoplasmic	253	272	0.88
Transmembrane Helix	273	294	0.87
Cytoplasmic	295	387	0.64
Transmembrane Helix	388	410	0.89
Non-Cytoplasmic	411	423	0.81
Transmembrane Helix	424	445	0.88
Cytoplasmic	446	453	0.77
Transmembrane Helix	454	477	0.82
Non-Cytoplasmic	478	534	0.91
Transmembrane Helix	535	559	0.85
Cytoplasmic	560	576	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRKNNTVSK RRSKPNLSVA TGQNGNAHGK MNSNIEMRKR DTSTGSSSSA RADRFMSRSS  60
   61 FTLDQDPPTP QTPGMTTTSF SDLPSSDKRN FMLLCLLYFL QGVPMGLATG SVPFLLKPYL 120
  121 SYGQIGVFSL ASYPYSLKLL WSPIVDAVWS RRFGRRKSWI TPVQVIAGLA MIYLGGHIED 180
  181 MMKQAGANGG AGVWKFTYWW FLLVFFCATQ DIAVDGWAIT LMSPPNISYA STAQTVGLTA 240
  241 GHFLSYTVFL AFNSKDFANR WFRTTPAEGG LLSLGTYLTI WGWAYLVVTT CLALMKKEDH 300
  301 VSERDSISAV YRSMWSVLKL KNVQTIIIVH LIAKIGFQAN DGVTSLKLLD KGFGQDNMAL 360
  361 VVLIDFPFEI GLGYYAGKWS TEYTPMRLWC WAFVGRLAAA ILAQFTVMIY PSAPEVPTWY 420
  421 MLTVIFEHVA STFMNTVMFV AVSAFHARVS DPAIGGTYMT MLATVSNLGG TFPRYFILKL 480
  481 VDMFTEATCV PPTTNPSPGS LKGDLVTSPF SCAVEPDRTR CIDGGGTCDI TRDGYYMTNI 540
  541 LCVLVGTVTF IMFIKPAVLK LQSLPLRAWR LAPGRE