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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49092986, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.44
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVLIRRKF GTEGGSDAEP SWLKRQVTGC LQSISRRACI HPIHTIVVIA LLASTTYVGL  60
   61 LEGSLFDSFR NSNNVAGHVD VDSLLLGNRS LRLGEGTSWK WQVEDSLNQD DQKVGNPELK 120
  121 REVDQHLALT TLIFPDSISK SASTAPAADA IPVPANASAQ LLPHTPNLFS PFSHDSSLVF 180
  181 TLPFDQVPQF LRAVQELPDP TLEDDEGEQK RWIMRATRGP VSGPNGTISS WLSDAWSSFV 240
  241 DLIKHAETID IIIMTLGYLA MYLSFASLFF SMKQLGSKFW LATTVLFSGM FAFLFGLLVT 300
  301 TKFGVPINIL LLSEGLPFLV TTIGFEKPII LTRAVLSASI DKKRQGSATS TPSSIQDSIQ 360
  361 TAIREQGFEI IRDYCIEISI LIAGAASGVQ GGLRQFCFLA AWILFFDCLL LFTFYTTILC 420
  421 IKLEITRIRR HVTLRKALEE DGITQSVAEK VASSNDWFGA GSDNSDADDA SVFGRKIKSN 480
  481 NVRRFKFLMV GGFVLVNVVN MTAIPFRNSS LSPLCNVFSP TPIDPFKVAE NGLDAIYVSA 540
  541 KSQKLETLVT VVPPIKYKLE YPSVHYAKLG ESQSIEIEYT DQLLDAVGGH VLNGVLKSIE 600
  601 DPVISKWIIA VLTLSIVLNG YLFNAARWSI KEPQAAPAPK EPAKPKVYPK IDLNAGPKRS 660
  661 MEECEAMLKA KKAAYLSDEE LIELSLSGKL PGYALEKSLE NEELMSRVDA FTRAVKIRRA 720
  721 VVSRTPATSA VTSSLETSKL PYKDYNYALV HGACCENVIG TLPLPLGVAG PLVIDGQSYF 780
  781 IPMATTEGVL VASASRGAKA INAGGGAVTV LTGDGMTRGP CVGFPTLARA AAAKVWLDSE 840
  841 EGKSVMTAAF NSTSRFARLQ HLKTALAGTY LYIRFKTTTG DAMGMNMISK GVEKALHVMA 900
  901 TECGFDDMAT ISVSGNFCTD KKAAALNWID GRGKSVVAEA IIPGDVVRNV LKSDVDALVE 960
  961 LNTSKNLIGS AMAGSLGGFN AHASNIVTAI FLATGQDPAQ NVESSSCITT MKNTNGNLQI1020
 1021 AVSMPSIEVG TIGGGTILEA QGAMLDLLGV RGSHPTNPGD NARQLARIVA AAVLAGELSL1080
 1081 CSALAAGHLV RAHMAHNRSA APTRSATPVS AAVGATRGLS MTSSR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle