YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67526601, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASIRSFTLQ CLPWSRSSLI RSQQRRWAQV HDVRFLATHH DPNQVLDRYR AKLDQRAKQE  60
   61 GFDSVEALKK AHQEKIDKLR REASTVLTPE PPAPSKKPHS PPPPPKPQSA AQSQVAAAAK 120
  121 SVSSSGIKPL GSYLDVEKVR ALPPKEIEAI WRLRHASNSN SICAVIPLET YQRIASAARQ 180
  181 NPQFILPLPR SASESQSSEA ETTATGDKGG ADIHFLQWAF HPPASAPSAV NTHTSTVIFT 240
  241 PLAAYKLHGA YAQPHTTITH HLDLADDKGL VLMHGQVMPD SGVSTAEATW LVSCVQRFYD 300
  301 FGGQASGRKG ELLRMFTQGD VQNFRIEELM AEAEKL

Type	Start	End	Confidence
Signal Peptide	1	17	0.53
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	336	0.99