YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|67526589, gi|...
Protein type: Transmembrane
Type Confidence: 0.83
Topology Confidence: 0.11
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVLTAPNS PPELSGSKSS KSSSYRSSSR MSSPDGVFTD IGNFEEIGLE DESAPYLESS  60
   61 VSHGRAPGVA RSSTARILAK SPVSTTRDLL SAAPRKPYAS QGRPGPRLMT ASRDLQTPRP 120
  121 SSKTRRNRSA SPLRPSQSPG IASSPSSQTL SPSAVNARPL NRKPSWQRSR KSLKELEAEY 180
  181 HDSDDELPED ASLWNIPISP RPVEDRAPSR DHSPNRSPGP QPFPLSHSVS EAAVASGPPR 240
  241 RSPATSRANR QMARSSSAGP ERGQISPRNP RLYSYNSMMS DLSEEAKNLT QALEFHADEN 300
  301 DRKRGDSLRS GNSSLRSSDE SKRDSKSPIE LPPVQKSNIM IDPLPISKEK EKVLSRTRPS 360
  361 WLPPKDQKEE RRHLREYKKM MEQSREADKR KAAQAASAKC ERDNTRDTLQ QIWDDYVYPN 420
  421 WTRAIGEPRT RELWWRGIPS RIRGQTWNRA IGNELALSDE SYNKALKRAK DARAKSEGDS 480
  481 GESNKKMMQW FDAIQADVSK AFPELNLFQE GGPLRETLVD VLEAYAMYRS DVGYLTGLHT 540
  541 IAALLVLQFP TPSSAFCAMA NALNRPLPVA FMTMDHGAIG RTFSLASATL RYKFPRLATH 600
  601 LYETLRLSDE EIFESMFRSL LTNGLDLERL SRVWDCWVFE GDRIFIRAAV AILGCLQTQL 660
  661 FGFTEPDDQS RLAVKNILAW GPHDIGTKPK ERRSAPAAPI AGFAGGLIGA AAGHYWILTS 720
  721 AGDEDGFISE MREAGKVQPR A

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle