YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40740748, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.59
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSSILAGA AFFASSVVTA DLDPIVIKGS KFFYKSNDTQ FYIRGVAYQQ EYSGPKSDTN  60
   61 NYKDPLADVE ACKRDVPYLQ KLNANTIRVY AVDPKADHKE CMSLLSDAGI YVIADLSSPS 120
  121 ESIIRNDPKW DFDLYQRYAS VVDELSQYSN VIGFFAGNEV SNDPETTDAS AFVKAAVRDM 180
  181 KRYIKAKNYR PMGVGYATND DSSIRVDMAD YFNCGEEEDS IDFWGYNVYS WCGDSNYEKS 240
  241 GYKSRTEEFK DYSIPVFFAE YGCNAVTPRK FTEVEALYGD KMAEVWSGGI VYMYFQEDNN 300
  301 YGLVSINNGN AKTLEDFSYL SKQLASATPS GTKKADYNPT NTALESCPTT GKKWLAAASP 360
  361 LPPSPNSDLC SCMEKSLSCV AKSDISGKKL SSTFSTVCGY QGGKFCEGVS GNATTGKYGA 420
  421 YSVCTPKQQL SFAMNQYYEA QAEQGNGQDA CDFDGAATSQ STSEPTAACS SLLSQAGSDG 480
  481 TGSVKASPTA ASGGSGGSGD AGADTSEGAA FALSPGSVHV GVFQVGAYVT TAIFAGAAMI 540
  541 LL

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	519	0.99
Transmembrane Helix	520	541	0.54
Cytoplasmic	542	542	0.58