YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1491929
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	483	0.66
Transmembrane Helix	484	501	0.68
Non-Cytoplasmic	502	521	0.80
Transmembrane Helix	522	545	0.89
Cytoplasmic	546	563	0.80
Transmembrane Helix	564	586	0.92
Non-Cytoplasmic	587	597	0.74
Transmembrane Helix	598	620	0.90
Cytoplasmic	621	651	0.80
Transmembrane Helix	652	672	0.65
Non-Cytoplasmic	673	723	0.55
Transmembrane Helix	724	748	0.74
Cytoplasmic	749	1323	0.72
Transmembrane Helix	1324	1349	0.74
Non-Cytoplasmic	1350	1381	0.71
Transmembrane Helix	1382	1403	0.87
Cytoplasmic	1404	1420	0.70
Transmembrane Helix	1421	1441	0.78
Non-Cytoplasmic	1442	1467	0.57
Transmembrane Helix	1468	1482	0.61
Cytoplasmic	1483	1483	0.12
Transmembrane Helix	1484	1498	0.54
Non-Cytoplasmic	1499	1499	0.19
Transmembrane Helix	1500	1518	0.86
Cytoplasmic	1519	1587	0.64
Transmembrane Helix	1588	1610	0.88
Non-Cytoplasmic	1611	1632	0.79
Transmembrane Helix	1633	1662	0.77
Cytoplasmic	1663	1668	0.74
Transmembrane Helix	1669	1692	0.87
Non-Cytoplasmic	1693	1772	0.48
Transmembrane Helix	1773	1792	0.70
Cytoplasmic	1793	1828	0.83
Transmembrane Helix	1829	1850	0.95
Non-Cytoplasmic	1851	1905	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGYPQGSGY QHGNYDDGYD HQGHGDAYYQ DDHHAQAGYY DNQDYGDGYY DRGGYGDHGY  60
   61 QHDGYYDAGH HDDYYGDQYY AQGGQGRGRH GRDSEEESET FSDFTMRSET ARAADMDYYG 120
  121 RGDERYNSYT DSQYGHGGYG YRPPSSQVSY GGNRSSGAST PVYGMDYGNG LPAGQRSREP 180
  181 YPAWASDGQV PVSKEEIEDI FIDLVNKFGF QRDSMRNMYD HLMTQLDSRA SRMTPNQALL 240
  241 SLHADYIGGD NANYRRWYFA AHLDLDDAVG FANMKLGKAD RKTRKARKAA KKKAQENPED 300
  301 VEGTLEALEG DNSLEAAEYR WKTRMNRMSQ HERVRQLALY LLCWGEANQV RFLPEALCFI 360
  361 FKCADDFYNS PECQNRVEPV EEFTYLNEII TPLYQYCRDQ GYEILDGKYV RRERDHNQII 420
  421 GYDDMNQLFW YPEGIERIVL EDKTRLVDIP TAERWTKLKE VNWKKVFFKT YKETRSWFHL 480
  481 VTNFNRIWVI HLGAFWFFTA YNAPTIYTKN YRQQLNNKPP GAYYWSAVGF GGALVSFIQI 540
  541 MATIFEWMYV PRRWAGAQHL TKRLLFLLLV FVINLAPGVV VFGFSSVLPG KVPLVVGIVH 600
  601 FFIALATFFF FSIMPLGGLF GSYLKKHGRQ YVASQTFTAS FPRLKGNDMW MSYGLWVCVF 660
  661 GAKLAESYFF LTLSIKDPIR YLSPYHVHQC AGVKYIGDKI CYYQPQILLG LMFFMDLTLF 720
  721 FLDSYLWYII CNTIFSVARS FYLGVSIWSP WRNIFSRLPK RIYSKVLATT DMEIKYKPKV 780
  781 LISQVWNAII ISMYREHLLA IDHVQKLLYH QVPSEQEGKR TLRAPTFFVS QEDQSFKTEF 840
  841 FPRGSEAERR ISFFAQSLST PMPEPLPVDN MPTFTVLIPH YSEKILLSLR EIIREDEPYS 900
  901 RVTLLEYLKQ LHPHEWDCFV KDTKILADET SQFNGDYEKN EKDAAKSKID DLPFYCIGFK 960
  961 SAAPEYTLRT RIWSSLRSQT LYRTVSGMMN YSRAIKLLYR VENPEVVQMF GGNSEKLEHE1020
 1021 LERMARRKFK ICVSMQRYAK FTKEERENTE FLLRAYPDLQ IAYLDEEPPA NEGEEPRLYS1080
 1081 ALIDGHCELL ENGMRKPKFR IQLSGNPILG DGKSDNQNHS IIFYRGEYIQ VIDANQDNYL1140
 1141 EECLKIRSVL AEFEELTTDN VSPYTPGVAS SSEAPVAILG AREYIFSENI GVLGDVAAGK1200
 1201 EQTFGTLFAR TLAQIGGKLH YGHPDFLNGI FMTTRGGISK AQKGLHLNED IYAGMNAMVR1260
 1261 GGRIKHCEYF QCGKGRDLGF GSILNFTTKI GTGMGEQMLS REYYYLGTQL PLDRFLSFYY1320
 1321 AHPGFHINNM FIMLSVQMFM IVLINLGALK HETINCNYNS DLPITDPLMP TFCAPLTPII1380
 1381 NWVNRCVISI FIVFFISFVP LAVQELTERG LWRMATRLAK HFGSFSFMFE VFVCQIYSNA1440
 1441 VHQNLSFGGA RYIATGRGFA TARIPFGVLY SRFAGPSIYT GFRLLIMLLF STSTTWTASL1500
 1501 IWFWVSLLAL CISPFLFNPH QFAWNDFFID YRDYIRWLSR GNSRSHASSW IGFCRLSRTR1560
 1561 ITGYKRKLLG VPSEKGSGDV PRARITNIFF SEIVAPLVLV AVTLVPYLYI NSRTGVSADV1620
 1621 DGGNDPHDAI LRIAIVAFGP IGINAGVAAV FFGMACCMGP ILSMCCKKFG AVLAAIAHAI1680
 1681 AVIILLVIFE VMFFLEHWSW PRCVMGMIAM AAIQRFVYKL IIALALTREF KHDQSNIAWW1740
 1741 TGKWYNMGWH SLSQPGREFL CKITELGYFS ADFVIGHLLL FIMLPALCVP YIDKFHSVIL1800
 1801 FWLRPSRQIR PPIYSLKQSK LRKRRVVRFA ILYFAMLILF LVLLIAPLIA RNQDLNLKMS1860
 1861 GILLELMQPL DSNNNDTMTS YTGSGVPKGM EPIASPSSYL TNLNN