YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67526469, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRINIPPA TRVCLISLIT LSFLYNIARW RQLDTTPGTP AVSPAVPYLT LVPSQFIFYP  60
   61 WTLLTATFVE QNIFTVLLNL ATLFYGGKYL ERAWGSREFT KFIVTIALVP NVVIVPCYLF 120
  121 WAAISGGSGS GSGAGSTPHS GYALFSSSSS SSDEACTTAC TFPADSALSS VTQICGGISI 180
  181 QASFLVAFKQ LVPEHTVTIF KGLVKMRVKH FPAVFLLLNT LSGIIVGTRV AATLAWFGLI 240
  241 TSWTYLRFYK RQPDLTGTST DGVGIKGDAS ETFAFKCLFP DKIQPPIGLV SDTIYSFLVS 300
  301 LKICTPFSAE EIASGNQQAL ARGEAGLPSL LSNRSGRSMA KREEAERRRA VALKALDQRL 360
  361 QAAVAARAHP GTSASSPNQP PTQTATPSVP GQTMLGETSY TPDHA

Type	Start	End	Confidence
Cytoplasmic	1	8	0.82
Transmembrane Helix	9	28	0.90
Non-Cytoplasmic	29	62	0.75
Transmembrane Helix	63	86	0.80
Cytoplasmic	87	101	0.87
Transmembrane Helix	102	124	0.93
Non-Cytoplasmic	125	170	0.92
Transmembrane Helix	171	192	0.62
Cytoplasmic	193	212	0.63
Transmembrane Helix	213	240	0.80
Non-Cytoplasmic	241	405	0.58