YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67526415, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.58
Transmembrane Helix	19	38	0.51
Non-Cytoplasmic	39	127	0.54
Transmembrane Helix	128	145	0.48
Cytoplasmic	146	352	0.73
Transmembrane Helix	353	377	0.78
Non-Cytoplasmic	378	396	0.61
Transmembrane Helix	397	418	0.84
Cytoplasmic	419	425	0.47
Transmembrane Helix	426	445	0.58
Non-Cytoplasmic	446	452	0.82
Transmembrane Helix	453	475	0.92
Cytoplasmic	476	484	0.81
Transmembrane Helix	485	507	0.88
Non-Cytoplasmic	508	526	0.85
Transmembrane Helix	527	549	0.91
Cytoplasmic	550	557	0.81
Transmembrane Helix	558	579	0.93
Non-Cytoplasmic	580	615	0.84
Transmembrane Helix	616	637	0.82
Cytoplasmic	638	656	0.76
Transmembrane Helix	657	678	0.61
Non-Cytoplasmic	679	697	0.56
Transmembrane Helix	698	731	0.80
Cytoplasmic	732	749	0.66
Transmembrane Helix	750	782	0.79
Non-Cytoplasmic	783	1201	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQHEQPAKAQ THQSLGPPIL FCQTLSLALP TTAQLFHLTT LISLPSHVVV CTSPALRIAS  60
   61 IAISLASSPQ LPLEWIRNPT TTAIEAWIAN QHPSPLLFVP RQLWAFWGAG SAQTRKPPTL 120
  121 HQYQMTMLLP TQSIPSLGLV ALLAFRSRNP KYLEGQGRVT GHRADPAHYS SHGLREQTAE 180
  181 LASLALTREP RALPQAMEIF RPVDGSAESV APLSLSGPDR TQEMGHTPTV HSGGSSVLTA 240
  241 LIRDPSSSVS REGQERTGDR NEEGERAHAV GPSAPGNADE EEDTSTEWTS LLAKTPSRPS 300
  301 RNYGGAGDVE SQVYAPKETQ RTLPSALTTV STCFQVLAHP KSWDRRTVWR QGVVRPFSLL 360
  361 PSVFLGLLLN ILDALSYGMI LFPLGEPIFS HLGSDGISMF YVSTIIAQLV FSCGGSIFRG 420
  421 GIGSEMIEVV PFFHQMAFTI LNRVGQDNPK SVIATTILAF SVSSVLTGLV FFLMGTCKIG 480
  481 SLIGFFPRHI LIGCIGGVGF FLILTGLEVS ARLPGSFEFD IPTMQKLFNL AALALWVTPL 540
  541 LLAIGLLVLK RFVRSNYLVG AYFIVVALCF YIVKFIAHIP MDSLRNSGWV FDAPSSSNPW 600
  601 YHFYTLYDFS AVHWPAFVDT IPAMFALTFF GILHVPINVP ALGISTGEDN LNVDRELIAH 660
  661 GVTNALSGFA GSIQNYLVYT NSLLFIDSGG NSRLAGVMLA GATAGIMLVG PVIVGFIPVM 720
  721 VVGALIFLLG IELMEEALVD TWGKLHRHEY LTVVIIVATM GVWDFVAGIL VGIILACLSF 780
  781 VVQTSRKSAI RATYSGKVAG STVRRPPIQQ RYLKEAGQQT LILKLGGYLF FGTIVDVENT 840
  841 MRGLIEDEAF SRLPIRFIIL DLCRVYGVDF SAAEAFTRIN RILKKRNVRM MISGLDVGGD 900
  901 VGKSLQNVGL FEPELTVRIF EDLNSALEYC ENEYLNVFYS HREALLRRKA APQNLEVPAI 960
  961 QHRSQSAEGF VGSPRHQYLQ RAATTTLSED ESAILPPAAW SAMRQPLPLL LQTFQGLTSR1020
 1021 NEDFWFAACP YFVRTTYAMG TTLFREGDVP NAFYLLESGM LRAEYDLPQG RYFELIVAGR1080
 1081 PCGELPFFSE TRRTATVKAE QDCVTWSLDA ENWKALKEEE PDIARELLTV SLKLTTERMD1140
 1141 SITSRCCWWV ACLGAALLGR RFQFAAAPTM ISRNMQSSLQ QIFDVSKHLH SEVDAQMSCH1200
 1201 L