YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49092596, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTPGMVELE QRNRLPTLFE VLSRRTLAPV DLFSFYIYMR DQQRSVDYLD FWLDVSQHMS  60
   61 LCRHYVRELR RSVLVATPDL EKAESKGSST PLENFESVND IPLVEAGPSG LRHGLRDLDN 120
  121 KEADQRLSAF LRSDGHSSKH SPQNSLGSQN DPARTMSNEQ PRPSLTQHES SSPGHTVARG 180
  181 DIRASAEKIL YTYLLPGAER EIVLPEEMVS SIINLVEDDG RDDPEVFDPA KDYVFQAMER 240
  241 DAFPGFLQAK ALGNLVPLSI MARLAFALIS FGGGFWGAFY VVLRDKPRNI RCWVILPFVI 300
  301 ACYFIVSYQY KIDPVMAFAG YSEYTFMNWS PVREPYVRKL LVKRAVATVL IASFVAAALS 360
  361 ILFILVPGTM L

Type	Start	End	Confidence
Non-Cytoplasmic	1	259	0.83
Transmembrane Helix	260	283	0.87
Cytoplasmic	284	289	0.79
Transmembrane Helix	290	310	0.83
Non-Cytoplasmic	311	344	0.45
Transmembrane Helix	345	368	0.89
Cytoplasmic	369	371	0.39