YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40740549, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYLQDIQKP SIERPFGIHL WPIFDKAFEA VMGYPASEFQ FVEGKTPMST FRETAIMLIV  60
   61 YYVTIFGGRE VMRNRPAFKL NTLFMIHNFV LTAVSAILLA LFVEQLVPTI WNHGIFYSIC 120
  121 DHRGGWTQPL IVLYYLNYLN KYLEFLDTVF LFLKKKPLTF LHTYHHGATA LLCYTQLIGL 180
  181 TAVQWVPITI NLLVHVVMYW YYFQSARGIR IWWKKYITRL QIIQFVIDLV FVYFASYTYF 240
  241 ASTYFPWAPN AGNCAGEEFA AFAGMGILTS YLVLFISFYI VTYNKAAKTG RPRRNTGKQA 300
  301 VIDMARYEVA PPSPAGEKKS NGSAVTTGRS NGPATRSRKA

Type	Start	End	Confidence
Cytoplasmic	1	82	0.60
Transmembrane Helix	83	103	0.93
Non-Cytoplasmic	104	181	0.73
Transmembrane Helix	182	203	0.89
Cytoplasmic	204	221	0.88
Transmembrane Helix	222	241	0.93
Non-Cytoplasmic	242	259	0.91
Transmembrane Helix	260	283	0.92
Cytoplasmic	284	340	0.99