YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169144958
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLREQKGE FYTQDETDAS PVISHFEQKQ PFPPLPPDEL DAPRDADTQS NCFPGEDDQD  60
   61 LASSHPDGDV EDDVDFHSHY SLEDQSFSDA STDSNDEQSP EDGIAMHHPF RQSASSLHGP 120
  121 NAFAPPFYNR PPTPLPPSPS LTSLLRPPFS TNTSRPTTPD SSDVETPNDT EAAVAKSARR 180
  181 ATTVPRASPK VPTYEYYGFV LYLASSLAFL IYILWSYLPS PFLHQLGIYY YPNRWWSLAF 240
  241 PSWLVMSIIY IYVALASYNT GYLTLPMNSV ENIVDEVANV AVIDGKGRRR PGGAAKMRPG 300
  301 ATSFQIMGPQ NRKVNWREIW SEGTDAVLDI PVGGVCEVLY GPERDEKDDD CVESPDL

Type	Start	End	Confidence
Cytoplasmic	1	195	0.97
Transmembrane Helix	196	218	0.90
Non-Cytoplasmic	219	236	0.90
Transmembrane Helix	237	258	0.88
Cytoplasmic	259	357	0.96