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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|40740309, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.25
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGPASNVD DLPVDQPLRT SVSSHKPSPK DVNAPKNDSN RDRETPDQGV PVDNPTAGQD  60
   61 SASKLEFDDF GLPIRSRPKP PRRDTESPVD DDQFHDAEEN VPDAGKQSAS TGANIEKDPA 120
  121 VEGLLDNKVS PAEHREERQS SRPALSERAT ATTDEVVASI AKKCAPETTP PEQNVEPLPV 180
  181 YTETPAQNDN ATSRPKHALG SEIPMSQWSH QRLNERKEKE DEEREENYEG EWKEMTALDE 240
  241 FDVYDDYGRL IARGSKQEDQ DAVYQGLGGA GKGYTRVQLD DDEDSINSLD EDTSYLFKET 300
  301 AATAAGVEGE ELRDTLSQLQ ATKDLLTEGQ RIAYVGVTRL TIFEMVMDME RAPSTKGTRK 360
  361 WKQKAIDSAR GWGQAMMTRL YSHMDISTAE QVMIEQLAEH GVRPEDLVRP LMENARVKNP 420
  421 LAEVDGSNKS LSPTSGKLKD EIRSTLSTDT NRSSESSSLP PYDREEDVPE VQTPSQLPTT 480
  481 EKIDIDIRWT ALCDLFLVLI SDSNYDSRSR TLLERVGASM DVSWLQIAKF EKRVIDALEM 540
  541 QEDADKETWD ESEHMEKRRK SALKRKYMIM GLATVGGGLV IGLSAGLLAP VIGAGLAAGF 600
  601 TTIGVGGTSA FLGGAGGTAL IASGATLTGS TIGLRASHRR TGAVQTFEYR PLHNNKKFNL 660
  661 IVTVSGWMTG NVDDVRLPYS TVDPIMGDIY SVLWEPEMLK SMGATINILA TEALTQGLQQ 720
  721 VLGSTILTAL MASLQLPLIL TKLSYLIDNP WNVSLARATA AGLILADSLM DRNLGKRPVT 780
  781 LLGYSLGARV IFSCLKELAD KGAYGIVQNV YLFGSPVVAN KDEYIKARGV VSGSFVNGYA 840
  841 SNDWILGYLF RATSGGILRV AGLAPVEGIR GIENVDVTKL VNGHMDYRAA IPRLLKHVGW 900
  901 EVLSEEFAEI EDPDPENHAE RQRELIREID EARREAETKP EKKRFGLFKR GKLAQKKAWE 960
  961 KYEVDQSESP QSPPSGNAAG SVLFDIDAIR AELASEMLEV KQLESTLPPM KLNLDSPSLN1020
 1021 SPATPSSFET GKPQDFRQSP PQPPPAASPG HTPPQRAPSP PSPPKDETYQ MTFDTSYHEP1080
 1081 PQRSLSYESP TYSNNNTFTR PVLRSSATTG VLGAGAATGA VGAFALEENA WADPDEGEIS1140
 1141 MTFE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle