YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49093768, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	93	0.91
Transmembrane Helix	94	114	0.90
Non-Cytoplasmic	115	135	0.81
Transmembrane Helix	136	159	0.86
Cytoplasmic	160	170	0.79
Transmembrane Helix	171	190	0.87
Non-Cytoplasmic	191	197	0.69
Transmembrane Helix	198	221	0.77
Cytoplasmic	222	325	0.94
Transmembrane Helix	326	349	0.75
Non-Cytoplasmic	350	374	0.75
Transmembrane Helix	375	399	0.80
Cytoplasmic	400	448	0.75
Transmembrane Helix	449	470	0.81
Non-Cytoplasmic	471	477	0.61
Transmembrane Helix	478	496	0.79
Cytoplasmic	497	509	0.59
Transmembrane Helix	510	531	0.87
Non-Cytoplasmic	532	562	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAVSHQDG SAVLRPRAVP DARKVEDVLL SSQIEKLDTE SSGHSTPIPE DAPPSAHSIS  60
   61 TARKQARARN RLFYTIHYVP RVSHFDPRSD YHNFRGFFTL FWIGLFIMVV TTVLRNIKDT 120
  121 GYPLRVRVWS LLTANVWSMG FSDIAMVCTS GLVIPLQYLS RTNGPFRWER GGIVLQSIFE 180
  181 VVWLGVWIKW PFMLRWTWTA QVFFTLHTLT ILMKIHSYAF YNGHLSATER RLSELDKPGS 240
  241 QPTGEAVRYP EVPTSKQPLR RPSIHKRSNS VAQLRDDLAT ELTSPMGNVT YPQNLTLYNY 300
  301 VDFIFCPTLC YELEYPRSKE RSWMEVGYKT LAVFGCIFLL TLVSEEFILP VLAEAGVRLH 360
  361 AANTPSDKAL IMAEAISMLL FPFMITFLLV FLVIFEYVLG AFAELTCFAD RHFYSDWWNS 420
  421 CDWLEFSREW NVPVHHFLRR HVYFSSLSHF SKPVAMFITF LVSSIFHELV MSCITKKLRG 480
  481 YGFLAMMLQL PIIAIQKSKY FRHKTTLNNV FFWLSMIFGL SLGAVDWSVL ICCKIVFLVD 540
  541 LNLESYVYIF AHEKHSTNLN AK