YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49093248, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	122	0.92
Transmembrane Helix	123	143	0.90
Non-Cytoplasmic	144	165	0.83
Transmembrane Helix	166	186	0.90
Cytoplasmic	187	207	0.81
Transmembrane Helix	208	226	0.86
Non-Cytoplasmic	227	233	0.80
Transmembrane Helix	234	257	0.91
Cytoplasmic	258	263	0.86
Transmembrane Helix	264	283	0.92
Non-Cytoplasmic	284	288	0.75
Transmembrane Helix	289	309	0.91
Cytoplasmic	310	322	0.83
Transmembrane Helix	323	344	0.92
Non-Cytoplasmic	345	359	0.89
Transmembrane Helix	360	382	0.88
Cytoplasmic	383	392	0.81
Transmembrane Helix	393	414	0.90
Non-Cytoplasmic	415	419	0.79
Transmembrane Helix	420	440	0.89
Cytoplasmic	441	582	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISPGNHHR RRSSVLTGAG PSQPPFVEQR EENHKREEQK PLAADDADIS DLSSIAESEE  60
   61 GRYLSSDDDY PDDEETGLTA SQRRQRRRRR KQRRQLDARI AGTKSRGDPF NLSSADRTVI 120
  121 SRLLVNVGLI LLWYFFSLAI SIYNKWMFSR DENDKEVFPF PLFTTSLHML VQFTLSSLIL 180
  181 FFIPSLRPQP TPSPSPDVEA KPVLTQFFYL TRLVPCGAAT SLDIGLGNMS LKFITLTFLT 240
  241 MCKSSALAFV LIFAFVFRLE TPSVKLIAII ATMTVGVVMM VAGETAFNAV GFVLIIASAF 300
  301 FSGFRWGLTQ ILLLRHPATA NPFSTLFFLT PVMFFSLLLI ALAVEGPTEI ITGLTALADA 360
  361 HGFGSGILLL IFPGVLAFCM ISSEFALLKR SSVVTLSICG IFKEVVTITA AGVIFHDKLT 420
  421 AVNVTGLIVT IGSIASYNYM KVSKMRAEAQ HNNWDSNPNS DSECDSAPRR QGDYQQVANP 480
  481 ETSEIPESLD VHPHGLNAGR SFPALTAGPS HNINALTIST TNLSDHGRGS THSPLVPGPS 540
  541 PLRSAPPIIV SMEDELQKAG HNLSSNDTTQ SSSGRGSPAQ SH