YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49093206, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADPESIRIL TLNCWGLKYL AKYRHERLSE IGRQLALANP PPDIIGLQEC WTQQDYESIR  60
   61 TQIAHILPYG KFYFGGIWGA GLAIFSKWPI EQTSMHAYPL NGRPTAFFRG DWFVGKGVAC 120
  121 ARIRYGQGKH DVAEVFCTHL HAPYEQEPHD SYLAHRTAQA WEIAKLMRGA AERGHLVIGL 180
  181 GDFNMLPSSF AHRLICAHSP VVDAWQVIYP DSSVGAAKDA VEQARGKPVP SAEFNLHHNG 240
  241 ATCDGPYNTW RWSKKDQKRL DKGHDIAVEA FKDSPDYKGK RLDYIFVGGE VGWSVRDVNI 300
  301 AMTQRHPTLK CSLSDHFAVQ TVITRDVSSM AAKQESGGGK SNRLTLPAET YTHILDMIHA 360
  361 YVRRERTQRR WRLIHFVASV LVTIGCLVGV WWNGDRPYIP FILTLISTLS FGAGILDGLI 420
  421 GGLFVSSELR ALKEFEWEIR NTKRIAEGLQ R

Type	Start	End	Confidence
Cytoplasmic	1	372	0.85
Transmembrane Helix	373	392	0.98
Non-Cytoplasmic	393	400	0.77
Transmembrane Helix	401	425	0.89
Cytoplasmic	426	451	0.92