YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49093004, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.71
Transmembrane Helix	8	28	0.66
Non-Cytoplasmic	29	73	0.88
Transmembrane Helix	74	93	0.61
Cytoplasmic	94	112	0.63
Transmembrane Helix	113	139	0.72
Non-Cytoplasmic	140	162	0.70
Transmembrane Helix	163	186	0.89
Cytoplasmic	187	205	0.87
Transmembrane Helix	206	226	0.94
Non-Cytoplasmic	227	239	0.71
Transmembrane Helix	240	256	0.50
Cytoplasmic	257	261	0.40
Transmembrane Helix	262	284	0.76
Non-Cytoplasmic	285	289	0.33
Transmembrane Helix	290	311	0.66
Cytoplasmic	312	331	0.43
Transmembrane Helix	332	355	0.87
Non-Cytoplasmic	356	363	0.58
Transmembrane Helix	364	386	0.90
Cytoplasmic	387	407	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVDRRKVAV FGGALALRLL LLLLFPSLPD LLTGRVEVST PVTSFKRLQE GLFLYNRNVS  60
   61 PYDGGVFHQY PIPTALLYSL VDLLNANALV TISDSAQAVS GRLYTSSRKL IKWDGIAVAA 120
  121 WFLFNPFTIA TCLGRSTAVF TSTGILYAIS AAVQGESLNA MFALGLASYL SIYPALLFIP 180
  181 LILLCYDRHA QRSQSSPSTP LFVAKHLAIL LASIAGLLGI SVLIIGDFSN LISATYGFQL 240
  241 LVPDLTPNIG LWWYFFIEIF DSFRDFFLGV FWLHLAAYAG SLSVRLRRQP LFVVTTLLGI 300
  301 FAVFKPYPSI SDASLYFAVL PIYRHLFPLM RYTFFSVSAL LYASLLGPAF YHLWIYAGSG 360
  361 NANFFYAITL VWSLGFSLIL ADMIFAALRD EWEQENPDKR GKPVKQV