YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49098086, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVSSALSLE NITGVYAPSA LLVVGTFILK KEWVPFAVAL AAGFVAWKLS VGGSSKPRKV  60
   61 LNPNEFQNFV LKEKNDISHN VTIYRFALPR PTDILGLPIG QHISLAATIE GQPKEVVRSY 120
  121 TPISSDNEAG YFDLLVKAYP QGNISKYLTT LKVGDTMKVR GPKGAMVYTP NMCRHIGMIA 180
  181 GGTGITPMLQ IIKAIIRNRP RNGGNDTTQV DLIFANVNPD DILLKDELEK LAAEDDGFRI 240
  241 YYVLNNPPEG WTGGVGFVTP DMIKERLPAP ASDIKILLCG PPPMVSAMKK ATESLGYTKA 300
  301 RPVSKLEDQV FCF

Type	Start	End	Confidence
Cytoplasmic	1	8	0.55
Transmembrane Helix	9	29	0.58
Non-Cytoplasmic	30	32	0.70
Transmembrane Helix	33	51	0.67
Cytoplasmic	52	174	0.58
Transmembrane Helix	175	191	0.33
Non-Cytoplasmic	192	313	0.63