YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40739476, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	395	0.65
Transmembrane Helix	396	418	0.78
Non-Cytoplasmic	419	427	0.56
Transmembrane Helix	428	449	0.59
Cytoplasmic	450	457	0.67
Transmembrane Helix	458	479	0.91
Non-Cytoplasmic	480	487	0.73
Transmembrane Helix	488	509	0.91
Cytoplasmic	510	516	0.67
Transmembrane Helix	517	538	0.90
Non-Cytoplasmic	539	547	0.70
Transmembrane Helix	548	568	0.91
Cytoplasmic	569	633	0.90
Transmembrane Helix	634	653	0.92
Non-Cytoplasmic	654	672	0.90
Transmembrane Helix	673	691	0.77
Cytoplasmic	692	702	0.65
Transmembrane Helix	703	723	0.88
Non-Cytoplasmic	724	728	0.74
Transmembrane Helix	729	751	0.88
Cytoplasmic	752	766	0.78
Transmembrane Helix	767	788	0.80
Non-Cytoplasmic	789	800	0.62
Transmembrane Helix	801	818	0.80
Cytoplasmic	819	866	0.47
Transmembrane Helix	867	887	0.78
Non-Cytoplasmic	888	1592	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKSRPGWRF LSSLRAPPTR RFATEARLTS DHVRIVEVGP RDGLQNEKKS ISLETKLELI  60
   61 SKLAKTGVTT IEAGSFVPAK WVPQMASTAE ICEHLLQTPP QSLNAIAYNY LVPNVKGLEG 120
  121 LIKVMDATGA SASTPGTKTT PPTTTEISLF AAATEAFSKA NTNCTIQESL DRIRPIVALA 180
  181 KTKDIRVRGY VSVALGCPYE GPDVPPSKVA DITATLLEMG ADEVSVADTT GMGTAPRTME 240
  241 LLQALKAAGI ANTDLALHFH DTYGQALVNT IVGLEHGVRI FDSSVGGLGG CPYSKGATGN 300
  301 VSTEDLVHTI HGLGMHTGID LEEMSRIGQW ISDELGRPNE SRAGKATIAR LQSYLPLLVM 360
  361 PGEQQMLPLP GSPSTSWARF RAQLGALFHG ADPNVCVAFW LFGLINNVLY VIILSAALDL 420
  421 VGPNVPKGVV LLADVLPSFG TKLVAPYFIH TVPYSMRIVI CVVLSALGML VVALSPAYVD 480
  481 GGSISSKLAG IILASLSSGI GELSFVGLTH FYGPFSLAAW GSGTGAAGLV GAGAYALATT 540
  541 SLGLRVKTTL MTSAFLPFVL AVSFFFVLPR ARIQLHSVYG DVEEHADDSV LSNNDDGERE 600
  601 GLLSSSAHSA VSLKSTYRVR GWHRLRANLR RARGLFFPFM LPLLLVYIAE YTINQGVSPT 660
  661 LLFPLKETPF THFRAFYPAY NAIYQVGVFI SRSSTPFFRI HDLYLPSILQ IINLIVLTLH 720
  721 SLFNFIPNVY LIFIVIFWEG LLGGLVYVNT FAEIGDRVPR EDREFSLSAT TVSDSGGICI 780
  781 AGFLGMVFEQ IGKLRWIDRS AIYIYACSFS YLSRVAMIDH VLGRPSTRFR KVQVIAVFLF 840
  841 WSYYLLRGNK HGPPVVRGIS ARLSRRLTVW QTTVVVVLWL YFCRNFAKIV GLESPEPLAN 900
  901 LYSRSFFRAT WITTALDAGF WTAMRVRPKW LRDILSLIGT VYYLFAAEQA DDKVRRVRAT 960
  961 LTVEHLRVSW NKGTTPYLWA LASLVRPRLT RYPPRAIRIP RPRQSIYTEP TNAWLYFDGP1020
 1021 MSALREQTCI VLDIPGGGFV SMTPRHSEDR LLAWAGKTKL PILSLNYKKA PEYPYPYALN1080
 1081 ECYDVYHSIF TTRGRCLGLA GDVPPRIILT GDSAGANLAV GTALMVLQSS DRRPSLAQGQ1140
 1141 SSLPAPDGLV LSYPALNMKI ESWMSEEHVA LIQDKSTNRS VVQRKDMDYK RLTPFATPGA1200
 1201 SSDDLQKNSY LSEPDLETGA LVEEAKGSKI DEDEEALDMQ TAYLANNQPK KIQTRLAVSS1260
 1261 MISYVNDRIL SPEMMRAMVI LYIGPHNRPD FNTDYLLSPV LAPEALLAQF PKTYIITGER1320
 1321 DPLVDDTVVF AGRLRQAKLR RFQERQELGL EKSQRRFNEK DYVEVSLLPG ISHGFMQMAG1380
 1381 FFPDSWKHIY RCAAWIQTLV DMANIKKSSP STSSRNLSNS HTSKSDFNQA TRPSHKRTLT1440
 1441 GESSADEDKP LEMSIGKMGP LTPMVCNSTE GDSDGHVPTP MVEAETETEV ETEQSPRTSD1500
 1501 ITTSSSKADD QKSTGGRRPR GRHARSTGLG RRRTFAPSNI NIAPEWASDP VSPMRPRESS1560
 1561 LCSLPSEEDL LRRRMSGLAG GLMGIGEGAR TP