YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49100447, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPTADIRA RAPEAKKVHI ADTAINRHNW YKHVNWLNVF LIIGIPLYGC IQAFWVPLQL  60
   61 KTAIWAVIYY FFTGLGITAG YHRLWAHCSY SATLPLRIWL AAVGGGAVEG SIRWWARDHR 120
  121 AHHRYTDTDK DPYSVRKGLL YSHLGWMVMK QNPKRIGRTD ISDLNEDPVV VWQHRNYLKV 180
  181 VFTMGLAVPM LVAGLGWGDW LGGFVYAGIL RIFFVQQATF CVNSLAHWLG DQPFDDRNSP 240
  241 RDHVITALVT LGEGYHNFHH EFPSDYRNAI EWHQYDPTKW SIWAWKQLGL AYDLKKFRAN 300
  301 EIEKGRVQQL QKKLDRKRAT LDWGTPLDQL PVMEWDDYVE QAKNGRGLVA IAGVVHDVTD 360
  361 FIKDHPGGKA MISSGIGKDA TAMFNGGVYY HSNAAHNLLS TMRVGVIRGG CEVEIWKRAQ 420
  421 KENVEYVRDG SGQRVIRAGE QPTKIPEPIP TADAA

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.44
Transmembrane Helix	34	56	0.89
Cytoplasmic	57	62	0.39
Transmembrane Helix	63	85	0.87
Non-Cytoplasmic	86	94	0.41
Transmembrane Helix	95	116	0.78
Cytoplasmic	117	180	0.59
Transmembrane Helix	181	215	0.72
Non-Cytoplasmic	216	455	0.50