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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49099054, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.48
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRNDSSTA DAFNKPGLLN SSPGPSDPPR TQSAKMLSHM QSRTANKSRL KDDHVEKLER  60
   61 EFKYKHLSLL GVFVWILLLH VVGIFFFTKG FLLTRMVLEN KSSCDDLPFD DSRSVPNQSN 120
  121 REGCWHPKSF DKAIVIIIDA LRYDFTVPFA PNAESESAQL FHDNIPVLYE TAVNSPQNAF 180
  181 LLPFIADPPT TTLQRLKGLT TGTLPTFVDA GSNFAGTAID EDNIVAQLHA AGKSIVQLGD 240
  241 DTWQALFPDY FNADLTRPFD SFNVWDLHTV DNGVNENLFP LLEPQNYTKW DVIFGHYLGV 300
  301 DHAGHRYGPS HPAMAAKLSQ MDQVIRDLID RIDDTTLLVV MGDHGMDSKG DHGGESDDEV 360
  361 DAALWMYSKK GVFGRTSQET IMPPKYARER FVPQIDLVPT LSLLMGLPIP FNNLGSPIEE 420
  421 AFIGTSGSDW ENLVNVNRLS SAQIKRYQQA YARNRGSEDS GNSGSMEYWE TAERQWQAHH 480
  481 GRPNPKSFVS INEAYKQYQR HTLQACRRLW ASFDVPSMMQ GIGVLLAGIV LLVFYARGVQ 540
  541 SDRTLLTGPL LSRVGLGSIL GALVGTLMAI LGLTEIKVLE LSALLAAVGS ICGASVAIFG 600
  601 SSQRLSLPLP NSLWGWLAIL FTVSQSIGFA SNSYTIWEDE ILLFFLSTFG VVAGVSSMRQ 660
  661 QSTTDRVLGV YHSIVFVILG RIASLSRLCR EEQMPFCRST YYASSTSSTS APWQLTIPFL 720
  721 VTLILPTVIK GFYAGSKSYE GAASLWIGIG FRLGLFVTSI FWVLEEIDSK EWLPLSDESL 780
  781 KTVRVFLAQL VLGLAFAAGT TAFTYSKPCV SISVAQTNTE PEPKRPSLGE QQLPRTTVTI 840
  841 LGFGNVHGTR FFFLAINFCL AITLMQKPMG QGAMGLLLWQ ILSLLEILDT NALVTNNSSI 900
  901 GPVVLGLLGS FYYFKTGHQA TISSIQWETA FIPLTTVKYP WSPLLVVLNT FGAQILTAIA 960
  961 VPLTVLWKRP LQLNDKSASS TSEKPALRLL SDVAQAAATY ILYFATINLA TTMWAGHLRR1020
 1021 HLMLYRVFSP RFMFGAIVLG VVDVVLILFS IAGVRWSTLS VGEIFGW

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle