YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49097590, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	141	0.95
Transmembrane Helix	142	163	0.92
Non-Cytoplasmic	164	170	0.79
Transmembrane Helix	171	190	0.93
Cytoplasmic	191	204	0.73
Transmembrane Helix	205	224	0.72
Non-Cytoplasmic	225	252	0.73
Transmembrane Helix	253	274	0.93
Cytoplasmic	275	282	0.76
Transmembrane Helix	283	304	0.91
Non-Cytoplasmic	305	338	0.91
Transmembrane Helix	339	361	0.86
Cytoplasmic	362	378	0.90
Transmembrane Helix	379	401	0.89
Non-Cytoplasmic	402	430	0.84
Transmembrane Helix	431	450	0.80
Cytoplasmic	451	479	0.86
Transmembrane Helix	480	500	0.92
Non-Cytoplasmic	501	513	0.87
Transmembrane Helix	514	534	0.92
Cytoplasmic	535	547	0.91
Transmembrane Helix	548	570	0.86
Non-Cytoplasmic	571	586	0.83
Transmembrane Helix	587	606	0.93
Cytoplasmic	607	664	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDQRSKDDL GMIGDDRGRS EEDKGQDPQA PAYLSYDLLA LGACRLRSRS ASAGYSRRSA  60
   61 VFLYSAVPLP PSSFSSRLIS SSGLFPAIAS SSGPRGVMGV EKDDGITAAP QNPVYDASVA 120
  121 EKGVLEVPQE NELHRALKAR HITMIAIGGA IGTGLIIGTG SALEKAGPGA ILISYAFMGF 180
  181 IVYLVMCGLG EMATWLPRSS GFTGYAVRFC DPALGFALGY TYWFKYIIVT PNQLTAAALV 240
  241 IQYWLPADKV NPGVWITVFL VLIVFINYFG VGFFGEFEFW LSSFKVVVIV GLILLSFILM 300
  301 LGGGPDHDRK GFRYWKDPGA FNSYIDMGPD GNGSAAGRFY AFWATLVSAT FAYLGTELVG 360
  361 VTVGEAQNPR KTIPRAIKLT FYRIIFFYVI SVLLVGTLVP YDSSELKQAN SASTSSAASP 420
  421 FVLAIQLSGI PALPHILNAC ILAFVFSAAN SDLYIATRTI YGLAKEGKAP KILTKTDRRG 480
  481 VPFVALGLCT LIALIAYMNV SSSSKTVFKY FVDLVSQFGL LSWISLLVTH ICFVKARKAQ 540
  541 EIPKNELAYT APLGVWGSYF ALFWCIVVSL TKSFDVFTGD TFNYKTFITS YLGIPLYLIL 600
  601 IFGYKFTTRC KRVLPHEADL YTDKDAIDRE EAAYLARQEA KRAAQGANHK QANWFYKTFV 660
  661 SWLF