YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67539932, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	123	0.69
Transmembrane Helix	124	143	0.88
Non-Cytoplasmic	144	226	0.59
Transmembrane Helix	227	243	0.33
Cytoplasmic	244	281	0.60
Transmembrane Helix	282	299	0.83
Non-Cytoplasmic	300	695	0.72
Transmembrane Helix	696	721	0.83
Cytoplasmic	722	727	0.58
Transmembrane Helix	728	753	0.78
Non-Cytoplasmic	754	761	0.58
Transmembrane Helix	762	785	0.83
Cytoplasmic	786	839	0.70
Transmembrane Helix	840	859	0.64
Non-Cytoplasmic	860	933	0.66
Transmembrane Helix	934	955	0.80
Cytoplasmic	956	983	0.83
Transmembrane Helix	984	1007	0.79
Non-Cytoplasmic	1008	1030	0.88
Transmembrane Helix	1031	1051	0.92
Cytoplasmic	1052	1090	0.96
Transmembrane Helix	1091	1114	0.90
Non-Cytoplasmic	1115	1129	0.92
Transmembrane Helix	1130	1148	0.83
Cytoplasmic	1149	1286	0.97
Transmembrane Helix	1287	1310	0.90
Non-Cytoplasmic	1311	1326	0.94
Transmembrane Helix	1327	1347	0.93
Cytoplasmic	1348	1379	0.83
Transmembrane Helix	1380	1401	0.88
Non-Cytoplasmic	1402	1422	0.85
Transmembrane Helix	1423	1443	0.79
Cytoplasmic	1444	1472	0.82
Transmembrane Helix	1473	1495	0.88
Non-Cytoplasmic	1496	1512	0.73
Transmembrane Helix	1513	1532	0.93
Cytoplasmic	1533	1573	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFSGRLRSE HLSSANNHDI MNVSAYDTWK GKERELEEPD TCRICRGEGT EQDELYYPCK  60
   61 CSGSIRFVHQ PCLVQWLAHS QKKHCELCKT PFHFTKVYDP NMPDSLPTLL FIKQLSIHCF 120
  121 RTIVTWLRWV LVAFVWLGWL PWSMRAIWRA LFWLADGRWS SADPTHQGYD RHNVTASLHN 180
  181 ATLVASSVVA EPSSVAGQPS LEPTSSMIGF SASEPILLNL MKKALSTLFF PAMSSSFGST 240
  241 DSINVTATPL KRRPSWLSDV KFLNSLTPSP TINNILIDTL EGQLITLLVV VSFILIFLIR 300
  301 EWVVQQQPLD NIAEGEREAA DQLIANNRPQ VEARDPEPEA EHFENIPEEE IPQNGQGVIR 360
  361 QEELADDRNT TSEQPAREPL DFEAPLSIRD LLAGVAGGPV TPPIRHNSDG NDGFILDIAN 420
  421 SQRGPQIDQP QYGINMDLYR DIYRRSNGDL DEMSRIIREE GRFEELVRNV TTNNRPEQTI 480
  481 NGYPRFIVSD STNMNAETVD DARLAPPRVS FSPRLPHQGD ADSADSNMPN AYASTWPSSS 540
  541 APLNQDQSQQ ASASAISDSE TEDSRTEPSS SSGLVADNGG GGAVANSEFG EESPNPSATS 600
  601 QAMAEPETSL TRRVVDWFWA DLDPDDPNQG HQPDAEEDLI DDPAVEEHLE HPENDRNVEV 660
  661 DAILPGIDQN DVDAVEEADD LEGILELIGM QGPIFGLLQN GVFCALLISF TVAAGIWLPY 720
  721 LAGKIALVLL AHPIQFVLGV PMTAVSVFAD VVLDTLIGSL GYIMYWVSMI CKLVFSPLAA 780
  781 IVPLGEWTRP ITSASLSLID ASSQRLGSVI NTFFVFHEAD VPMFSVLSHL ALKIHEARIA 840
  841 SLFRLAFLLG KLILHDLPLH MGSFSKAFFL GQNSSTLGNL LALARDQVND ASHDIYTRFF 900
  901 MPPSAWVSPN VIGLSANDGA IDYSLAVWDT KDRTIAILMG YLLASTVGLG YLKVARFISG 960
  961 ADQGQRVEGM VAEGLHQAGG VMKVILIIGI EMIVFPLYCG ALLDVALLPL FEGATVAARV1020
 1021 EFTSEYPLTS LFVHWFIGTC YMFHFALFVS MCRKTMRSGV LYFIRDPDDP TFHPVRDVLE1080
 1081 RNITTQLRKI AFSALVYGAL VIICLGGVVW GIYYGFDGVL PAHWSSKDPV LEFPIDLLFY1140
 1141 NVGIPLVLKE LKPSDGLHSL YRWWFRKCAR FLRLSDFFFG ERHPDEEGVS SLSGNNASPD1200
 1201 RPATDEDEKS AFTNKTEPQG KRDGKFVRAP ASDQVRIPKG SPVFLEVTEA NERVDGKPDN1260
 1261 DQGLHGRLNN QFTKVYIPPF FRTRVAAFIF FIWVFAAATG VGTTIVPLLI GRRIMSFYVP1320
 1321 GRPVNDVYAL SVGMGFACFV AYFLLSCRTG FRLVRGRLGP YLRSPGEATR VMANALTSGL1380
 1381 SILYVIAAFF IFLPSLFALA IELYLLVPVY TYLGHENDLV VHFVQDWTLG VLYVQMAVKL1440
 1441 ALWHTRSRPA AVLRGIFRDG WLKPNIKLAT RALLFPMTLL ALVAVTLPLC LGFASNLILF1500
 1501 SFRPELQSKV YRYAYPVTLA MGLLAWFAYL VYRQVEVWKV SIRDEFFLIG ERLHNFREKR1560
 1561 AREVGVPRRV ITG