YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|31323648
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.89
Topology Confidence:	0.29
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRGLLVFLV VNLLIVTFLI RSVSTLLSLL LEDASADAIH RAELPSPNSS LIEQRPQKIP  60
   61 KIIHQTYKNE SIPEVWQEAQ QSCIDLHPDY EYILWTNEKS RDFIAAEYPW FLDTFDNYKY 120
  121 PIQRADSIRY FVLAHYGGTY IDLDDGCNRR LDPLLSYPAW VRRTAPTGIS NDAMGSVPQH 180
  181 PFFLRVIEML QSYDRSWLLP YITVMYSTGP LFLSVIWKEY MAESPAEAAR VRILMQDEYN 240
  241 RFSWSFFTHH VGNSWHGKDA RLIFWMGQHW MLLTVAGFVL AGAVGLCLWW AYGRLLLLGA 300
  301 KYRYRYSKLP IPGLRLPSPS RRSRGMMPIL LRRVSFKDEE SGPTETSYEY VSRRD

Type	Start	End	Confidence
Signal Peptide	1	25	0.87
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	196	0.90
Transmembrane Helix	197	217	0.68
Cytoplasmic	218	238	0.58
Transmembrane Helix	239	253	0.29
Non-Cytoplasmic	254	269	0.61
Transmembrane Helix	270	293	0.92
Cytoplasmic	294	355	0.68