YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67540716, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPVSGLLTR LKALYSKQDD EPAISVQAAA GISVCLTLIY VLPFYVSPSM RPSATLSRDA  60
   61 PSVIRARIRA VTLSCLICSV AVLWVIVAKD DSSFTHALKL MGWWPISFTD IFRSLLLTAI 120
  121 LFTGPLFERG VAEGEWREWF KRDRISETLG GWIGWRNYIA VRLSLVQLAH LIDGAIQGPI 180
  181 TEEVMFRSAI IPLHLLARIS PGHIVWVAPL YFGVAHVHHF YEFRLTHPDT SVIAAVLRSV 240
  241 FQFAYTTVFG WYATFVYLRT GSLFAVILIH MFCNWCGLPR LWGRVEAAVP IRPTFNRGKE 300
  301 DSDKSLEYSY GHLGIGWTVA YYALLVGGAT SFGYSLWSLT ESLHALAEFT SS

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.92
Transmembrane Helix	24	47	0.85
Cytoplasmic	48	67	0.91
Transmembrane Helix	68	88	0.95
Non-Cytoplasmic	89	110	0.85
Transmembrane Helix	111	132	0.85
Cytoplasmic	133	194	0.72
Transmembrane Helix	195	220	0.75
Non-Cytoplasmic	221	247	0.42
Transmembrane Helix	248	278	0.73
Cytoplasmic	279	313	0.59
Transmembrane Helix	314	337	0.82
Non-Cytoplasmic	338	352	0.57