YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40738656, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIALELFDT FVGDRLYSAL LPASLSSTVS VPGFPTAANS TLSLFGASKP FVYEPATKLL  60
   61 YLEPSKYAYL SAWPRNNIYR QFLSFFLIVW IFGFIVYFIS ATLSYMFIWD KSTVKHPKFL 120
  121 KNQIPLEIAQ TMRSMPIMSL LTAPFLVAEV RGYAKLYDTF DEEPFPYYSI LQFPLFIAFT 180
  181 DFFIYWIHRG LHHPLVYKTL HKPHHKWIMP SPFASHAFHP VDGWSQSVPY HVFPFIFPLQ 240
  241 KAAYVLLFGF INIWTVMIHD GEYVANSPVI NGAACHTMHH LYFNYNYGQF TTLWDRMGGS 300
  301 YRKPNEELFR RETKMGEEEW KRQTKEMETI LKDVEGDDDR KYLAEEDSKK NL

Type	Start	End	Confidence
Cytoplasmic	1	18	0.78
Transmembrane Helix	19	38	0.54
Non-Cytoplasmic	39	81	0.59
Transmembrane Helix	82	109	0.80
Cytoplasmic	110	128	0.60
Transmembrane Helix	129	148	0.67
Non-Cytoplasmic	149	167	0.64
Transmembrane Helix	168	187	0.92
Cytoplasmic	188	206	0.65
Transmembrane Helix	207	221	0.46
Non-Cytoplasmic	222	236	0.55
Transmembrane Helix	237	256	0.71
Cytoplasmic	257	352	0.79