YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49098358, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQFSEETKE RISKVIDVSR VAVHYGYLPL ILYLGSSDIQ PLCPSGYNTS NIRLYTVDRT  60
   61 SSSRVGVSLR VIREIFHKEG GLIAFYRGLT PNLIGNSSSW ALYFLFYDNV KEILGSWRSR 120
  121 SNSNGSQQRR EPLEASDYFI ASGSAGIITS ILTNPIWVIK TRMLATGSMS PGAYTSFTAG 180
  181 AMQILRSEGV PGFYRGLVPS LFGVSHGALQ FMAYEKLKFH RANAHSGGLQ RKELSNMDFF 240
  241 IISSVSKIFA GSITYPYQVL RSRLQTYDAY LAYRGLQDAI VKIWATEGLG GFYKGLGPNL 300
  301 FRVLPSTWVT FLMYENTRAY LSKVMSNA

Type	Start	End	Confidence
Cytoplasmic	1	87	0.62
Transmembrane Helix	88	104	0.37
Non-Cytoplasmic	105	137	0.65
Transmembrane Helix	138	158	0.81
Cytoplasmic	159	163	0.60
Transmembrane Helix	164	185	0.59
Non-Cytoplasmic	186	192	0.70
Transmembrane Helix	193	214	0.74
Cytoplasmic	215	238	0.76
Transmembrane Helix	239	255	0.52
Non-Cytoplasmic	256	328	0.55