YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40738468, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	72	0.97
Transmembrane Helix	73	93	0.86
Non-Cytoplasmic	94	104	0.71
Transmembrane Helix	105	129	0.87
Cytoplasmic	130	141	0.85
Transmembrane Helix	142	162	0.86
Non-Cytoplasmic	163	179	0.70
Transmembrane Helix	180	199	0.95
Cytoplasmic	200	206	0.83
Transmembrane Helix	207	227	0.92
Non-Cytoplasmic	228	243	0.84
Transmembrane Helix	244	263	0.89
Cytoplasmic	264	279	0.84
Transmembrane Helix	280	302	0.90
Non-Cytoplasmic	303	331	0.81
Transmembrane Helix	332	352	0.79
Cytoplasmic	353	374	0.83
Transmembrane Helix	375	395	0.93
Non-Cytoplasmic	396	405	0.87
Transmembrane Helix	406	425	0.96
Cytoplasmic	426	442	0.97
Transmembrane Helix	443	464	0.92
Non-Cytoplasmic	465	785	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAFDFDLE KNPPVVQSTA DNSSDGAVPG ETFTYGDSTY AKIQRLAAEL NIEQRGIERV  60
   61 PAAEQTDTSV FNIGSMWLAA NMVVSSFAIG VLGKSVYSLG FVDAILTVLF FNLLGIMTVC 120
  121 FFSCFGPFGL RQMVFSRLWF GWYVTKGFAV LNILACLGWS AANAIVGAQM LHAVNSDVPG 180
  181 FAAILIISIC TLLVTFAGYK VVHLYEYWSW IPTFIVFMII LGTFAHSGDF QNIPMGVGTS 240
  241 EMGSVLSFGS AVYGFATGWT SYAADYTVYQ PANRSKRKIF LSTWLGLIVP LLFVEMLGVA 300
  301 VMTATDIKGS KYDVGYATSG NGGLIAAVLQ PLGGFGDFCL VILALSIVAN NCPNFYSVAL 360
  361 TVQVLSRYAQ RVPRFIWTLF GTGVSIAIAI PGYSHFETVL ENFMNFIAYW LAIYSAIAIM 420
  421 DHFVFKRGFS GYVVENFDKR EKLPVGIAAT IAFGFGVAGM ITGMSQPWQF VLVSVTGGIG 480
  481 VYKSFKHDSQ HHKTAAMSRP TKADWADDEE FDDPSALPPQ QITTNKDGTK TVVSYRFNDE 540
  541 GKKVKVTRRI KTTVVREHVN PQVAERRTWA KFGLEKGHAA GPSFDTTSVG ENIVFRPSVN 600
  601 WKAQAAEAEK NGGEKGSIKD QLKDKKVKCR ICSGEHFTAR CPFKDTMAPV DEPGAGGAEG 660
  661 GAAAGEDAAG GLGAGGGSYV PPHLRKGAAG GGERMAGKYE KDDLATLRVT NVSELAEEQE 720
  721 LRDLFERFGR VTRVFLARDR ETQRAKGFAF ISFADRSDAA RACDKMDGFG YRHLILRVEF 780
  781 AKRAT