YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49100019, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPPPSNLP LAERLKALAQ TLQFAWFIGH VTLLGSVFRY LLSYATFNYY SGAAQVSYRL  60
   61 AFISAAVTYG IVVYKGHVAR GRLQGSLPSI LLKLAGDENV QYLGMALVWL YSRQVPLALL 120
  121 PFSVYSVFHV ATYTRAHLIP TLQPPSTPAG SPGRANAKQS PLAETIGRFV KQYYDASMDL 180
  181 VAGLEIALLF RLLLAILTFS KGSFILLFIY LTFFRARYSQ SSFVQQAVRH FTARVDASMS 240
  241 HQSTPPAVRQ GWEGFKDAAR QAYQATDVSR FTAGAGKKPQ

Type	Start	End	Confidence
Cytoplasmic	1	20	0.93
Transmembrane Helix	21	42	0.90
Non-Cytoplasmic	43	55	0.83
Transmembrane Helix	56	78	0.83
Cytoplasmic	79	114	0.84
Transmembrane Helix	115	133	0.60
Non-Cytoplasmic	134	187	0.63
Transmembrane Helix	188	214	0.84
Cytoplasmic	215	280	0.65