YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ENT8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.93
Transmembrane Helix	21	39	0.96
Non-Cytoplasmic	40	57	0.83
Transmembrane Helix	58	77	0.95
Cytoplasmic	78	85	0.85
Transmembrane Helix	86	107	0.90
Non-Cytoplasmic	108	116	0.88
Transmembrane Helix	117	140	0.90
Cytoplasmic	141	148	0.87
Transmembrane Helix	149	170	0.91
Non-Cytoplasmic	171	185	0.90
Transmembrane Helix	186	208	0.90
Cytoplasmic	209	237	0.93
Transmembrane Helix	238	259	0.90
Non-Cytoplasmic	260	291	0.60
Transmembrane Helix	292	319	0.64
Cytoplasmic	320	330	0.48
Transmembrane Helix	331	353	0.89
Non-Cytoplasmic	354	363	0.53
Transmembrane Helix	364	388	0.91
Cytoplasmic	389	389	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDEKVIVDE VETRDAYRVA YVIHFLLGAG SLIPWNALIT AVDYFGYLYP DKHVEKTFTV  60
   61 AYMSCSVLVL VLMMTWNTRM SYRVRMNLGF SMFIIAMMIS PLIDWVWKGE KGENVSYMLM 120
  121 VGSVVLCGLA DGVVGGSLIG SAGKLPRQYM QAIFAGTASS GIIISLLRIA TKASLPQTPQ 180
  181 GMRTSAHSYF IVSSTILLCC FISCNVLHKL PVMQQHLKFH QPLHSTLTIW MVGRKIKWPA 240
  241 SGMLIIYSVT LSIFPGFIAE NLKSQLLQSW YPILLITVYN ISDFVGKSLT ALYLWQSIKS 300
  301 ATWACIVRLL FYPLFSACLR GPKWLRTEVP VVVLTFMLGL TNGYLTSVLM IMAPKTVHAS 360
  361 EAELAAIFMV VFLGLGLVCG SVIGWLWLI