YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MSMO1_PIG
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATNQSISIF SSASLAVEYV DSLLPENPLQ EPFKNAWNYM LNNYTKFQIA TWGSLIVHEA  60
   61 LYFFFCLPGF LFQFIPYMKK YKIQKDKPET WENQWKCFKV LLFNHFCIQF PLICGTYYFT 120
  121 EYFSIPYDWE TMPRWYIALA RCFGCAVIED TWHYFLHRLL HHKRIYKYIH KIHHEFQAPF 180
  181 GMEAEYAHPL ETLILGTGFF IGIMLLCDHV ILLWAWVTVR LIETIDVHSG YDIPLNPLHL 240
  241 IPFYAGSRHH DFHHMNFIGN YASTFTWWDR IFGTDAQYNA YNEKRKKAEK KTE

Type	Start	End	Confidence
Non-Cytoplasmic	1	54	0.85
Transmembrane Helix	55	77	0.83
Cytoplasmic	78	99	0.86
Transmembrane Helix	100	119	0.90
Non-Cytoplasmic	120	136	0.82
Transmembrane Helix	137	156	0.66
Cytoplasmic	157	191	0.63
Transmembrane Helix	192	217	0.81
Non-Cytoplasmic	218	293	0.52