YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34482030
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWILDQLARL LDRPFFPWKN VLVGFSLGQF ILEGILSFRQ YKVLQRTKAP KVLEGEVSQK  60
   61 VYDQSQAYGR AKAKFGFISG LYGQIQNLAF IYGDVLPKLW GLSGFLLAQY LPARFQGEIP 120
  121 QTLLFLFGFN LISTVLSLPI SYYNTFVLEE KFGFNKQTVK LWVSDMLKGQ MLGIVLGAPI 180
  181 ISAVLKIVQK TGTSCFYYLW LFGVFVQVFA ITIYPIAILP LFNKLSPLEP GAIKTGVENL 240
  241 AKKLNFPLQE LHVIDGSKRS AHSNAYFYGL PWKKHIVIYD TLIEKSEPEE VVAVLSHELG 300
  301 HWSLSHTTKL FGIAQFHMFY IFALFSAFVN NRSLYQSFGF HTEQPIMIGF LLFSDALAPM 360
  361 DAVVKLLMNI LSRKFEFEAD AFAVNLGYSE ELSQSLLKLQ IQNLSTMDAD WMYASYHYSH 420
  421 PILPERLKAL GWKGRKVTDH KEEDSEKPVK AADREL

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.45
Transmembrane Helix	16	38	0.68
Cytoplasmic	39	87	0.52
Transmembrane Helix	88	111	0.50
Non-Cytoplasmic	112	122	0.44
Transmembrane Helix	123	146	0.87
Cytoplasmic	147	165	0.48
Transmembrane Helix	166	188	0.85
Non-Cytoplasmic	189	195	0.47
Transmembrane Helix	196	218	0.92
Cytoplasmic	219	309	0.50
Transmembrane Helix	310	329	0.80
Non-Cytoplasmic	330	345	0.55
Transmembrane Helix	346	364	0.62
Cytoplasmic	365	456	0.67