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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|26788027, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.71
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKCMCICVN NFTLSLSLSA VGVCTGTQNL LSVTGSSEVQ YKLMKEMYTG CQIVIGNLEI  60
   61 TQMEHNRDFS FLQSIREVTG YILIAINQFR RLPLEQLRVI RGTSLYEDKF ALAVLVNYQK 120
  121 DGVYGLRELG LTHLTEILEG GVQIIQNKFL SYAPQINWQD IVKNSGAEVI IQDNGPEVPC 180
  181 HESCGGPCWG PGNDTCQILT KTVCALQCNV RCFGRSPSEC CHNECAGGCT GPLDTDCFAC 240
  241 RNFNNSGSCV SQCPRADIYN KVTFKMEPNP NAKYQFGSMC VSHCPPNFVV DGSSCVSSCP 300
  301 ADKMEVDKTG VKRCEKCEGL CPKACVGTGT GTASRQTVDS QNIDSFINCT KIQGSLHFLV 360
  361 TGIKGDSYNN ISALDPRKLK IFNTVREITD ILSIQSWPEE LEDLSVFSNL ATIQGRTLYR 420
  421 GYSLLVMKIP TLKSLGLRSL KRISDGGIYI TGNTQLCYHH TVNWTRLFGS GPRALRRQKS 480
  481 LDIKENRPQE QCRLLGSGTR SVFVLQELQK RRNMCTRLQL HVRGSDECKA CAHLQDGPYC 540
  541 VSSCPEGVQG ENGLIIYKFP NRQNKCQPCH ANCTLGSTHY GVNIVRYRLP VTAIVLSVIF 600
  601 CVLLAFSVFV LSVLYRRSLS IRRKRAMRRY LQSGESFEPL EPGEKGVKVH ARILRTSELK 660
  661 KIKLLGSGVF GTVHKGIWIP EGDTVKIPVA IKTIQDRTGR QTFQEITDHM LAMGSLDHAY 720
  721 IVRILGICPG ASLQLVTQLS PQGSLLEHIR QRRDNLNPQR LLNWCVQIAK GMYYLEEQRM 780
  781 VHRNLAARNI LLKSDLIVQI ADYGIADLLY PDDKKYFFNE IKTPIKWMAL ESILFRRYTH 840
  841 QSDVWSYGVT VWEMMSYGAE PYSAMRPQEV PDLLEKGERL SQPQICTIDV YMVMVKCWMI 900
  901 DENVRPTFKE LANEFTRMAR DPHRYLVIKE EDRAPDSASD ETHQNGTEID ILGVALEDQD 960
  961 DEVLEDAIDA PRYITPSRSF SRLRIDSHRS SLTPSTTAGY LPMTPGLESS VQTGWASRSR1020
 1021 LDSACTVSES SEGRGALELE MNDDFSSVGS LRRVRHREDS AYMSQRDSLS GPPETTSTGT1080
 1081 QGEEDQNEYV LPGFGESPEK ETLLFTSSRS TLSQKRLSRG HSGDFLEANR GAGEEYEYMN1140
 1141 NQTLSLSHIP GQLKEYNQRA PRNRSASFNP GGMYSNHKPS RPSKRSSIEG SESSGGLSQS1200
 1201 STDQRSHSDG DFLSSEAEYT DGDLEGGGGE AYEYEDMDSL AAGGASGAEY QNLDGEDEER1260
 1261 DEDWSGGPRS PGPYVQVHAG TNHNAFDNPD YWHSRSFHKT KAVHT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle