YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52627178, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFFPEFLND SSTHYDGPGL KVPLPRAGFI TLSLLMAVFS ITSVVLNATV IVVTLRHKQL  60
   61 RQPLNFALVN LAVADLGTTL TGSVPSVVTN AVGYYIMGRI GCVLEGFCVA FFGISALCTV 120
  121 ALIAVERLFV VCRPLGSITF QCRHAAGGLL SCWLWSLIWN TPPLLGWGSY QLEGAGTSCG 180
  181 PHWQSRELRD VSYIICYFSV CFAVPFAIIL VSYSWLLYTL RQVLLEMVNN LGTFGMLFSA 240
  241 YYDLGHIFKH YKHCNAALTL VLFFVVEYHW LPYAALALTV VSKPEVQLAV LVKVLPIYMA 300
  301 KSSTVYNPLI YIYMNKQVSR TS

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.87
Transmembrane Helix	29	53	0.87
Cytoplasmic	54	65	0.76
Transmembrane Helix	66	88	0.81
Non-Cytoplasmic	89	102	0.70
Transmembrane Helix	103	125	0.87
Cytoplasmic	126	139	0.75
Transmembrane Helix	140	159	0.82
Non-Cytoplasmic	160	192	0.67
Transmembrane Helix	193	217	0.89
Cytoplasmic	218	222	0.64
Transmembrane Helix	223	245	0.64
Non-Cytoplasmic	246	252	0.43
Transmembrane Helix	253	273	0.68
Cytoplasmic	274	322	0.54